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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcctctcattcattcttctttcttattattgttctgaaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa...

Basic information

species Arabidopsis thaliana
transcript AT2G47850.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G17260.1 (Glycine max), 5'ss of exon 2
TGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcctctcattcattcttctttcttattattgttctgaaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa--------
 ||| || | || |  ||  | ||||  || ||||||||||||||||| ||||| || |||   || |||||||||||||||||||| ||||||||  ||||||    ||||  ||| |  ||     ||   || ||     | |    |     | |    |||          || | ||||  || ||    | |         
GGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGgtaacactttcccatcact--ttgagaattgagataatctgcattaggtta---gaattcaatggaagtgtct---tgttgctcttggtattagtagtaggtgttatt

upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G17250.1 (Glycine max), 5'ss of exon 2
TGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcc-tctcattcattcttctttctta--ttattgttctg-aaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa
 ||| |||| || |  ||  | ||||  || |||||||| |||||||| ||||| || ||| | || ||||||| |||||||||||||||||||||  ||||||    |||| ||   || |    |||   |||  ||||  ||      |  |  | | ||         |  |  | |  ||   |   |||||| | |  
GGAGCGACCCGGCGTGCCGAATTGTGTGTATTACATGCGGACTGGTGTGTGTGGATATGGTGACAGGTGTCGTTTCAATCACCCTCGCGATCGTGCTGCGgtaacactttccatcgttttgagatatctgcattaggttataatttcatggaagagtcttgctgctg---ttcgttttagtaatttcatgccttttttgcccc-

upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G02550.2 (Glycine max), 5'ss of exon 2
TGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcctctcattcattct--tctttctta--ttattgttctg-aaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa
 ||| |||| ||||  ||  | ||||  || ||||||||||| ||||| || || || ||||  || |||||||| ||||||||||||||||||||  ||||||    ||||     ||     |  |||   |||  ||||  ||     || ||  | | ||            | || |  |   |     |||     |  
GGAGCGACCCGGTGTGCCCAATTGTGTGTATTACATGCGAACCGGTGTGTGCGGATATGGTAGCAGGTGTCGTTATAATCACCCTCGCGATCGTGCTGCGgtaacactttccatcgttttgcgataatctgcattaggttataatttcatgaaacactcttgctgctc---tttgtttaagtagtaggcatcaatttcatgcc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164056652|gb|ES079706.1|ES079706
EST:     CGATCGTGCCTCG                         GTTGAAGCAACTGTTAGAGCTACCGGGCAGTATCCTGAACGTTTTGGTGAA
genomic: CGATCGTGCCTCGgtaatttctt ... tcatgtatagGTTGAAGCAACTGTTAGAGCTACCGGGCAGTATCCTGAACGTTTTGGTGAA