Sequence
atgc intronic sequence ATGC exonic sequenceTGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcctctcattcattcttctttcttattattgttctgaaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa...
Basic information
species | Arabidopsis thaliana |
transcript | AT2G47850.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G17260.1 (Glycine max), 5'ss of exon 2
TGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcctctcattcattcttctttcttattattgttctgaaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa--------
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GGAGCGATCCGGCGTGCCGAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGgtaacactttcccatcact--ttgagaattgagataatctgcattaggtta---gaattcaatggaagtgtct---tgttgctcttggtattagtagtaggtgttatt
upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G17250.1 (Glycine max), 5'ss of exon 2
TGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcc-tctcattcattcttctttctta--ttattgttctg-aaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa
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GGAGCGACCCGGCGTGCCGAATTGTGTGTATTACATGCGGACTGGTGTGTGTGGATATGGTGACAGGTGTCGTTTCAATCACCCTCGCGATCGTGCTGCGgtaacactttccatcgttttgagatatctgcattaggttataatttcatggaagagtcttgctgctg---ttcgttttagtaatttcatgccttttttgcccc-
upper sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G02550.2 (Glycine max), 5'ss of exon 2
TGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcctctcattcattct--tctttctta--ttattgttctg-aaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa
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GGAGCGACCCGGTGTGCCCAATTGTGTGTATTACATGCGAACCGGTGTGTGCGGATATGGTAGCAGGTGTCGTTATAATCACCCTCGCGATCGTGCTGCGgtaacactttccatcgttttgcgataatctgcattaggttataatttcatgaaacactcttgctgctc---tttgtttaagtagtaggcatcaatttcatgcc--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164056652|gb|ES079706.1|ES079706EST: CGATCGTGCCTCG GTTGAAGCAACTGTTAGAGCTACCGGGCAGTATCCTGAACGTTTTGGTGAA
genomic: CGATCGTGCCTCGgtaatttctt ... tcatgtatagGTTGAAGCAACTGTTAGAGCTACCGGGCAGTATCCTGAACGTTTTGGTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGAGACCAGGTGCTCCTGACTGTGCCTACTACATGCGAACTGGTGTCTGTGGCTACGGTAATAGATGTCGTTACAATCACCCTCGCGATCGTGCCTCGgtaatttcttcctctcattcattcttctttcttattattgttctgaaaccatccatactaggaggacacaatcaaatgcttctctctgttttttccgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctct