1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCGTCACTATTGGAGTCGTCGGTGGATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAACAGgtacgactgtgatcggatcggaaaaactataacctgctgtagaattttcgatttggtattcaaagaaaggatattttcctacttctattagaatggtctc...
species | Arabidopsis thaliana |
transcript | AT2G45790.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAACAG TCACAAACGACTATGACTATTGTTTCTCTGAGAATGGTCTTGTCGCCCATAEST: gi|152034089|gb|BP867302.2|BP867302
genomic: ATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAACAGgtacgactgt ... aattttgcagTCACAAACGACTATGATTATTGTTTCTCTGAGAATGGTCTTGTCGCCCATA
EST: CGTCGGTGGATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAACAG TCACAAACGACTATGATTATTGTTTCTCTGAGAATGGTCTTGTCGCCCATA
genomic: CGTCGGTGGATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAACAGgtacgactgt ... aattttgcagTCACAAACGACTATGATTATTGTTTCTCTGAGAATGGTCTTGTCGCCCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGTCACTATTGGAGTCGTCGGTGGATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAACAGgtacgactgtgatcggatcggaaaaactataacctgctgtagaattttcgatttggtattcaaagaaaggatattttcctacttctattagaatggtctc
- - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa