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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGgtactcttcttcactgattttactgaatgcaagtttaatcactggagaactggctatgtttgtttctgaattagtctgcaaattaggattaattgggtaggtttgattgcag

Basic information

species Arabidopsis thaliana
transcript AT2G45640.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483742|gb|EG526334.1|EG526334
EST:     ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAG                         AGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAGGCAAAGAACCA
genomic: ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGgtactcttct ... ttgattgcagAGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAGGCAAAGAACCA
EST: gi|152038382|gb|AV821346.2|AV821346
EST:     ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAG                         AGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAGGCAAAGAACCA
genomic: ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGgtactcttct ... ttgattgcagAGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAGGCAAAGAACCA
EST: gi|86075848|gb|DR371605.1|DR371605
EST:     ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAG                         AGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAAGCAAAGAACCA
genomic: ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGgtactcttct ... ttgattgcagAGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAGGCAAAGAACCA
EST: gi|124754983|gb|EH845113.1|EH845113
EST:     ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAG                         AGTGGTGGTCAT
genomic: ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGgtactcttct ... ttgattgcagAGTGGTGGTCAT
EST: gi|152033713|gb|BP562681.3|BP562681
EST:     ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAG                         AGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAGGCAAAGAACCA
genomic: ACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGgtactcttct ... ttgattgcagAGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAGGCAAAGAACCA