Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAAGATGAAGCTGTAGCTGCTAAGAAGAAGAGTGTTGAGGCCCGCAAGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagcaacactcttttgttcatctttgctgactaagatgactgttctgttcatggttgttgtaatgaatcatgatatattatttgcatgcttgtttag

Basic information

species Arabidopsis thaliana
transcript AT2G44120.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036885|gb|DR332640.1|DR332640
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036872|gb|DR332627.1|DR332627
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|164169163|gb|ES007753.1|ES007753
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCT
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCT
EST: gi|86036886|gb|DR332641.1|DR332641
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036883|gb|DR332638.1|DR332638
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCARAGAATACGCTGAGAAG                         GATAACTAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036875|gb|DR332630.1|DR332630
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036881|gb|DR332636.1|DR332636
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036876|gb|DR332631.1|DR332631
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|164103379|gb|ES021299.1|ES021299
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTA
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTA
EST: gi|86036880|gb|DR332635.1|DR332635
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036879|gb|DR332634.1|DR332634
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036882|gb|DR332637.1|DR332637
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036873|gb|DR332628.1|DR332628
EST:     A-CTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036877|gb|DR332632.1|DR332632
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|152035827|gb|BP862892.2|BP862892
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAAGGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036878|gb|DR332633.1|DR332633
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|86036874|gb|DR332629.1|DR332629
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTC
EST: gi|124717990|gb|EH809392.1|EH809392
EST:     AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAG                         GATAACGAGTTGATCC
genomic: AGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagc ... gcttgtttagGATAACGAGTTGATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAAAGATGAAGCTGTAGCTGCTAAGAAGAAGAGTGTTGAGGCCCGCAAGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATACGCTGAGAAGgtaataaagcaacactcttttgttcatctttgctgactaagatgactgttctgttcatggttgttgtaatgaatcatgatatattatttgcatgcttgtttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA