1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTACTGGTGGAGGTTTGATTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattccgtttgaagattctgtcttttaatttgttagtaatgtttagtttgttattcaacttgatgtgtcttatttttcatgctctagcag
species | Arabidopsis thaliana |
transcript | AT2G43500.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCC--T-T-T TTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAGEST: gi|116399826|gb|EG442418.1|EG442418
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcagTTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAG
EST: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCC--T-T-T TTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAGEST: gi|116399535|gb|EG442127.1|EG442127
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcagTTTAAATCTGTCATCGAAGATATGGAAAACCCTTTTGCTTCTAGAGAAAAG
EST: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTAT CEST: gi|116399535|gb|EG442127.1|EG442127
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcag-
EST: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTAT CEST: gi|116399535|gb|EG442127.1|EG442127
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcag-
EST: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTAT CEST: gi|116399535|gb|EG442127.1|EG442127
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcag-
EST: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTAT C
genomic: TTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattcc ... gctctagcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTGGTGGAGGTTTGATTCATTAAATTTTGCTACGTTGTGGGATCTTCAAGAAGAATCCTTTGTATgtaagattccgtttgaagattctgtcttttaatttgttagtaatgtttagtttgttattcaacttgatgtgtcttatttttcatgctctagcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG