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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTGAGAAGGAATTTCGGGTAGAAGTTGAGGCTATTGGTCATGTACGGCACAAGAATCTTGTTAGGCTTTTAGGATATTGCATAGAGGGAGTTCATCGgtgagtctcacttgtctttaatccatttgagcaattggattgtactgaatctaaatataatgatgaatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G42960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os01g41730.1 (Oryza sativa), 5'ss of exon 2
AAGCTGAGAAGGAATTTCGGGTAGAAGTTGAGGCTATTGGTCATGTACGGCACAAGAATCTTGTTAGGCTTTTAGGATATTGCATAGAGGGAGTTCATCGgtgagtctcacttgtctt---taatc--catttgagcaattggattgtactgaatctaaatataatgatgaatgcag-----------------------
| || || || || ||   ||| ||||||||| |||||||||||||  ||||||||||||| ||  | ||| |||| || ||||| ||||||    |  ||| | |||   || | ||   ||  |   || |   || |||     |  || ||||  |   |||  |  ||                           
AGGCAGAAAAAGAGTTCAAGGTTGAAGTTGAGTCTATTGGTCATGTTAGGCACAAGAATCTGGTGCGACTTCTAGGTTACTGCATTGAGGGAAGCTACAGgtaaatctgtgttttgttagttagcctttatattttcagttgatcgttcatggatctgcaggaaattgtatatttttcttgcagtgactgctacaatatg

upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 4
AAGCTGAGAAGGAATTTCGGGTAGAAGTTGAGGCTATTGGTCATGTACGGCACAAGAATCTTGTTAGGCTTTTAGGATATTGCATAGAGGGAGTTCATCGgtgagtctcacttgtctttaatccatttgagcaattggattgtactgaatctaaatataatgatgaatgcag------------------------------------------------------------------------------------------------------------------------------
| || || || || ||  |||| |||||||||||||| || ||||| ||||| || ||||||||  | ||||| || ||||||||||| ||||||||  ||| ||  |   |    ||| ||  || || | ||||   ||       ||  |  |   ||| || |||                                                                                                                                 
AGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGgtaagatttgttcactttttattgatgtg-gtaatttatttcattcctattcatttggcatgttggatgttattattatttattgtcatgatgaagtactttttcgttgaaaaacaaagtacttttccaattcttttgcaatcttgtcgatctgatttgcctgggatgtggttatgtacttattattctttaatatag