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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGCTGGAACCAACAAGGCGGCATCAAGCGGCACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCgtaagtcttatctttaatcatttggtttattaatggtgaattgatttccctagtgtctagaatatggtagtgtcaggctctgtatctaggctaatgtgtt...

Basic information

species Arabidopsis thaliana
transcript AT2G42680.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125257950|gb|EL272035.1|EL272035
EST:     CACTGAGAACCTTACTC                         ATGAACGTGTGCCTACTGAGCTAAAGAAA
genomic: CACTGAGAACCTTACTCgtaagtctta ... gtgaattcagATGAACGTGTGCCTACTGAGCTAAAGAAA
EST: gi|86081161|gb|DR376918.1|DR376918
EST:     CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTC                         ATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
genomic: CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCgtaagtctta ... gtgaattcagATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
EST: gi|47829297|gb|CK118981.1|CK118981
EST:     CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTC                         ATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
genomic: CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCgtaagtctta ... gtgaattcagATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
EST: gi|164182446|gb|ES115963.1|ES115963
EST:     CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTC                         ATGAACGTGTG
genomic: CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCgtaagtctta ... gtgaattcagATGAACGTGTG
EST: gi|164217862|gb|ES103712.1|ES103712
EST:     CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTC                         ATGAACGTGTGCCTACTG
genomic: CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCgtaagtctta ... gtgaattcagATGAACGTGTGCCTACTG
EST: gi|86086850|gb|DR382609.1|DR382609
EST:     TGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTC                         ATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
genomic: TGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCgtaagtctta ... gtgaattcagATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
EST: gi|116455455|gb|EG498047.1|EG498047
EST:     CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTC                         ATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
genomic: CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCgtaagtctta ... gtgaattcagATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
EST: gi|116455456|gb|EG498048.1|EG498048
EST:     CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTC                         ATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG
genomic: CACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCgtaagtctta ... gtgaattcagATGAACGTGTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAG