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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGTATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAGgtaagaattttgtgaattggagattcattgtgtatctctatggttatttagttctcatatataattttcttttgttcag

Basic information

species Arabidopsis thaliana
transcript AT2G40290.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G40290.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G35600.1 (Glycine max), 5'ss of exon 2
GACTTGTATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAGgtaagaattttgtgaattggagattcattgtgtatctctatggttatt-tagttctcatatataattttcttttgttcag
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GAACTTTATATTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGgtaaggatatatt---tt----attctttg-atggttccctgactgttgtagttactgaata-aacttcattccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124758417|gb|EH848547.1|EH848547
EST:     ATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAG                         GCTTTCAAGATCTTAGTGACGGATCCTGATTCA
genomic: ATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAGgtaagaattt ... ttttgttcagGCTTTCAAGATCTTAGTGACGGATCCTGATTCA