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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTCCAGATAAAGTTTCCGAGTTTCTTACGAAACATGATTTAGATCTTGTGTGTCGTGCCCATCAGgtagatatttttcaatcatgtctctttgatactactgcttttgtgatgttaacaagggagttggattttttatggcag

Basic information

species Arabidopsis thaliana
transcript AT2G39840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39840.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 2
GGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTCCAGATAAAGTTTCCGAGTTTCTTACGAAACATGATTTAGATCTTGTGTGTCGTGCCCATCAGgtagatatttttcaatcatgtctctttgatactactgcttttgtgatgttaacaagggagttggattttttatggcag
||| |||||||| |||||||| ||||  |||||||| || |||||||| || || ||  | || |||||||||||||| ||||| |||||||||||||||||   |    ||   | |  | ||| |  | |||    |||  | ||| | | ||  ||  |   | ||||     ||
GGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgttattggcattt--ttagttttctcttgttctat---tttactcatgctgaaaactgaaattcttcttttggtctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124785858|gb|EH875537.1|EH875537
EST:     CCGAGTTTCTTACGAAACATGATTTAGATCTTGTGTGTCGTGCCCATCAG                         GTCGTGGAGGATGGGTATGAAGTTCTTTGCTGATAGACAACTTGTGACGGT
genomic: CCGAGTTTCTTACGAAACATGATTTAGATCTTGTGTGTCGTGCCCATCAGgtagatattt ... tttatggcagGTCGTGGAGGATGGGTATGA-GTTCTTTGCTGATAGACAACTTGTGACGGT