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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTTTTTCCCAGATTTGGATCGGCGAATCTTTTGATGATAAAGgtttgatttttttattttctgggttgctcttgatttgttactcctagattgaacttgttgacatttctctgatttgttatttcataaagctatcatctttctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G39435.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874801|gb|AU235632.1|AU235632
EST:     GTTCTTTTTTCCCAGATTTGGATCGGCGAATCTTTTGATGATAAAG                         ATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAGAAATGG
genomic: GTTCTTTTTTCCCAGATTTGGATCGGCGAATCTTTTGATGATAAAGgtttgatttt ... ctttctgcagATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAGAAATGG
EST: gi|124821327|gb|EH906193.1|EH906193
EST:     GAATCTTTTGATGATAAAG                         ATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAAGAAATG
genomic: GAATCTTTTGATGATAAAGgtttgatttt ... ctttctgcagATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAA-GAAATG