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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGATGTGGTCAAGACCACTTCCTGAAGTTTATGATTCACAAGCTGTTGCAGATTACTTTAATTGCAGGCCTCATGTCGTTGCCTTTAGGCTTCTCGAGgtatttgtttagagtttttgttggttctgctactaatcactggatgatttgaaattatgataaatgctttagagatactgatgtttatctgatgaagtgtttcgtttagcctaacgcattagtattcttgtttttcttgagtgacggaaaattcggatgtgattttaattgattcttaaaatatag

Basic information

species Arabidopsis thaliana
transcript AT2G39190.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125013703|gb|EL085972.1|EL085972
EST:     CAGATTACTTTAATTGCAGGCCTCATGTCGTTGCCTTTAGGCTTCTCGAG                         GTATTTTCTGCGTT
genomic: CAGATTACTTTAATTGCAGGCCTCATGTCGTTGCCTTTAGGCTTCTCGAGgtatttgttt ... taaaatatagGTATTTTCTGCGTT
EST: gi|86060102|gb|DR355859.1|DR355859
EST:     TGTCGTTGCCTTTAGGCTTCTCGAG                         GTATTTTCTGCGTTCACGATTGCTGCCATCAGATTACGAACATCAGCATCA
genomic: TGTCGTTGCCTTTAGGCTTCTCGAGgtatttgttt ... taaaatatagGTATTTTCTGCGTTCACGATTGCTGCCATCAGATTACGAACATCAGCATCA