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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGTTGTGATTATGAAACTGTGAATCGGCTAAACACGGAAGTGTTGAATCCATTGCTTCAGGACCTTGTTAAGACACCATTTTACAGATATTTCAAGgttggttcatatttcttctttgatcatgaaagtatctagaggatttggaggtgtgttgtgataggtttgaatgcgtttaatag

Basic information

species Arabidopsis thaliana
transcript AT2G38960.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38960.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G23150.1 (Glycine max), 5'ss of exon 2
TTGTTGTTGTGATTATGAAACTGTGAATCGGCTAAACACGGAAGTGTTGAATCCATTGCTTCAGGACCTTGTTAAGACACCATTTTACAGATATTTCAAGgttggttcat-atttcttctttgatcatg---aaagtatctagaggatttg-----gaggtgtgttgtgataggtttgaatgcgtttaatag---------
||||||||||||||||||||||||| |||| || ||    ||||||||| | || |  || ||||| || || ||||| || || |   ||||||| |||||| | | ||  |  | ||||   | |||   | | | |||   | ||||      || |  | || || |    |||| |  |   || ||         
TTGTTGTTGTGATTATGAAACTGTGGATCGTCTTAATGAAGAAGTGTTGCACCCTTCCCTCCAGGAGCTCGTGAAGACCCCTTTCTTTCGATATTTTAAGgtttgcttattgtcacatcttatgttatgcctacattttcttatgaatttcctgttgatgcttcttatggttatcttgagtttgcc-aacagcctgataaa