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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCGGGAGAATGTGGCAGCTTGGATTTGCTTTCATGATCGGGATGATCTATTCAAAAAGTTTCTACAGAAGGTTCTTCGCCTTAAAGAGgtttgtattctacctgttgttttagtttttgtgattctagtgttgttcctgtttgtgataatttggtttgtacctgtgatttataacattgtcttatgcc...

Basic information

species Arabidopsis thaliana
transcript AT2G38770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38770.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 5'ss of exon 2
TTCCGGGAGAATGTGGCAGCTTGGATTTGCTTTCATGATCGGGATGATCTATTCAAAAAGTTTCTACAGAAGGTTCTTCGCCTTAAAGAGgtttgtattctacctgttgttttagttt--ttgtgattctagtgttgttcctgtttgtgataatttggtttgtacctgtgatttataacattgtcttatgcc-----
|| || ||||||||||| ||||||||||||||| ||||| || | ||| | |||||    ||  |  ||||||||||||| ||||| |||    || |  | | ||||  ||| ||||  || | | || || |       | | |    |  |||     ||||  |  | |||  | || |    |         
TTTCGAGAGAATGTGGCTGCTTGGATTTGCTTTTATGATAGGAAGGATGTGTTCAAGGCCTTCATTGAGAAGGTTCTTCGGCTTAAGGAG-CAGgtttgtttcttgtttctttggtttacttattaatc-agaggaaacagtttcttcttttgtttcaacagtactgg--aattactatatcgctgcaaataattgc