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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCTGGAAAGCCGCTTGGTTACAAAGAATGTCAGTTTCACAGAGTCATCAAAGATTTTATGGTTCAAAGTGGTGATTTTCTTAAGgtcagtaccctttacttcttataaatcctcacttcttgattgcttatgttggttctcaattggcactggcttttagttctcttgtttgtgtgttcttggttcgttacttaaatctcttcttactgcattatctaatttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT2G38730.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 2
AAAAGCTGGAAAGCCGCTTGGTTACAAAGAATGTCAGTTTCACAGAGTCATCAAAGATTTTATGGTTCAAAGTGGTGATTTTCTTAAGgtcagtaccc-tttacttcttataaatcctcacttcttgattgcttatgttggttctcaattggcactggcttttagttctcttgtttgtgtgttcttggttcgttacttaaatctcttcttactgcattatctaatttgtgcag
||||||||||   ||  |||||||||| | ||| ||||| ||||| |||||||||||||| ||| ||||   |||||||||| | |||||   | |    |  |||||| |   || |||    | ||  | || |  | |||||    | |   |  | |||  ||||||   ||    |                                                    
AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaaactctcttcttctttctcttcataaatcgaccgttttttattgttcttttctagttgtctcattttcttctctccctttccag----------------------------------------------------