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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTTACTAGCGCTGTTCCGCAGATGAAGCCCGGTTTTGATCCTAGTAAAGGAGGAAGACCTGAGTTCTTCTTTGATGATGGAGCTTATCCAGAACAGgtgactacattgatcttagtgtagtgtgttcttgtggatttcttcatttcttcttggtttttgaattcatgattttgtttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G37660.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076409|gb|DR372166.1|DR372166
EST:     TCTTCTTTGATGATGGAGCTTATCCAGAACAG                         GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG
genomic: TCTTCTTTGATGATGGAGCTTATCCAGAACAGgtgactacat ... ttgtttgtagGTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG
EST: gi|124759379|gb|EH849509.1|EH849509
EST:     ACCTGAGTTCTTCTTTGATGATGGAGCTTATCCAGAACAG                         GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG
genomic: ACCTGAGTTCTTCTTTGATGATGGAGCTTATCCAGAACAGgtgactacat ... ttgtttgtagGTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG
EST: gi|164015236|gb|ES207873.1|ES207873
EST:     CTTATCCAGAACAG                         GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG
genomic: CTTATCCAGAACAGgtgactacat ... ttgtttgtagGTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG
EST: gi|125190422|gb|EL205376.1|EL205376
EST:     AGGAGGAAGACCTGAGTTCTTCTTTGAGTGATGGAGCTTATCCAGAACAG                         GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGCTAAGG
genomic: AGGAGGAAGACCTGAGTTCTTCTTTGA-TGATGGAGCTTATCCAGAACAGgtgactacat ... ttgtttgtagGTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGCTAAGG
EST: gi|47831378|gb|CK121062.1|CK121062
EST:     AAGGAGGAAGACCTGAGTTCTTCTTTGATGATGGAGCTTATCCAGAACAG                         GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG
genomic: AAGGAGGAAGACCTGAGTTCTTCTTTGATGATGGAGCTTATCCAGAACAGgtgactacat ... ttgtttgtagGTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTCTTACTAGCGCTGTTCCGCAGATGAAGCCCGGTTTTGATCCTAGTAAAGGAGGAAGACCTGAGTTCTTCTTTGATGATGGAGCTTATCCAGAACAGgtgactacattgatcttagtgtagtgtgttcttgtggatttcttcatttcttcttggtttttgaattcatgattttgtttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT