Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATACAGTGAAAGTCTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGGgtaattttctcattatatttgatgattctggtttatgactatgtgtaactatctaagattgcttgttatgttttcag

Basic information

species Arabidopsis thaliana
transcript AT2G37240.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37240.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G36130.1 (Glycine max), 5'ss of exon 2
TAGATACAGTGAAAGTCTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGGgtaattttctcat-tatatttgatgattctggtt----tatgacta-tgtgtaactatctaagatt-gcttgttatgttttcag----------------
| ||| | |||||||| || |||||||  ||||| | |||||| |||||||| || |||||||||||||| |||||||| |||||||| || || ||||||| ||||| |||| | || |  |  | |   |||    | |  ||| | ||    | | ||  |||  |||||  |  |||                   
TGGATTCGGTGAAAGTGTTTGATTTGAATGGAAACGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttatcatatttactacacaaattaagttaccctttagctagtttgagtttgtttagtattcacttgtgctccttttttctctgtacatttacag

upper sequence: AT2G37240.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0040g03130.t01 (Vitis vinifera), 5'ss of exon 2
TAGATACAGTGAAAGTCTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGGgta-attttctcattatatttgatgattctggtttatgactatgtgtaactatctaagattgcttgttatgttttcag-------------------------------------------------
| |||| || | |||| || |||||||  ||||| | |||||| ||||||||||| ||||||||||| || || || || ||||||||||| ||||||||||   || | |  ||   ||| |||  ||   || || |  |    |  ||   |||   | |  |      || ||                                                  
TGGATAGAGCGCAAGTGTTTGATTTGAATGGAAACGGGATTCCAATTTCTGATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGGgtgtgttctgtttttcagttttatgcatccaattcattatgaacctttgcttattaaagcttccagaagcacttgcactgatcactctatttatttcctttatattgttcttgattatttactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467378|gb|EG509970.1|EG509970
EST:     GATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGG                         ATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAG
genomic: GATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGGgtaattttct ... atgttttcagATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAG
EST: gi|125265375|gb|EL279460.1|EL279460
EST:     TAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGG                         ATGTGTGCTCTGTCGGAAACGAGCAGCTTAT
genomic: TAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGGgtaattttct ... atgttttcagATGTGTGCTCTGTCGGAAACGAGCAGCTTAT
EST: gi|116467371|gb|EG509963.1|EG509963
EST:     GATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGG                         ATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAG
genomic: GATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGGgtaattttct ... atgttttcagATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAG