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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGAAAAGAGGTCTTCCTGCTAATGGGAAAATCGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTCTCTGAATTCATCAGTTTCGTCACCAGCGAgtatgtcttttttaaccttttaacaatgctatgttgtgtttgctcttgctgaatgtttagaggcttgataggaactttgagttttagtttcaagtcttaa...

Basic information

species Arabidopsis thaliana
transcript AT2G37060.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37060.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0040g03260.t01 (Vitis vinifera), 5'ss of exon 1
TCATGAAAAGAGGTCTTCCTGCTAATGGGAAAATCGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTCTCTGAATTCATCAGTTTCGTCACCAGCGAgtatgtcttttttaaccttt--taacaatgctatgttgtgtttgctcttgctgaatgtttagaggcttgataggaactttgagttttagtttcaagtcttaa
||||||| |  |  ||||| || ||||| || |||||||| ||||| || |||||  |||| ||||| ||||| || |||||||||||| |||| |||||||||| ||  |  |   |||  |   |||  || |  |||  || |  || ||  ||||    |  ||| |    | || ||    |||             
TCATGAAGAAGGCGCTTCCCGCGAATGGAAAGATCGCTAAGGATGCGAAAGAGATCATGCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACTAGCGAgtatggctgatgcattttttctttttaattttaggcggtgcgtgat--tgatgg-tgttgttggttttgtttttcaattggatgcctag-------------

upper sequence: AT2G37060.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S25_10V6.1 (Physcomitrella patens), 5'ss of exon 1
----TCATGAAAAGAGGTCTTCCTGCTAATGGGAAAATCGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTCTCTGAATTCATCAGTTTCGTCACCAGCGAgtat--gtcttttttaaccttttaacaatgctatgttgtgtttgctcttgctgaatgtttagaggcttgataggaactttg--agttttagtttcaagtcttaa
    ||||||| |  |   | ||||||||||  || || || |||||||| ||||||| ||| ||||| ||||| || ||||||||||||||| |||| |||||||||  || |||   ||| | | || ||| ||             | ||||  |         | | | ||   | || ||  | | ||    |  |  | |  
CGCATCATGAAGAAGGCGTTGCCTGCTAATGCTAAGATTGCCAAAGATGCGAAGGAGACTGTTCAGGAGTGTGTTTCAGAATTCATCAGTTTCATCACTAgcgagtatccgtttttcacaacgtctaaataattctga--------catttttgcatagatcccgctgccctcatcttacctctgctaatcttgtagttgatccatgc

upper sequence: AT2G37060.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S25_89V6.1 (Physcomitrella patens), 5'ss of exon 2
TCATGAAAAGAGGTCTTCCTGCTAATGGGAAAATCGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTCTCTGAATTCATCAGTTTCGTCACCAGCGAgtatgtctttttta-accttttaacaatgctatgttgtgt-ttgctcttg-ctgaatgtttagaggc-----ttgataggaactttgagttttagtttcaagtcttaa
||||||| |  |   | ||||||||||  || || || |||||||| |||||||  || || || ||||| || ||||||||||||||| |||| |||||||||   |||  ||    ||||     |  ||||| |  | |||| |||| || | |||||     |      | ||  |  | |||     || |  |         
TCATGAAGAAGGCGTTGCCTGCTAATGCCAAGATTGCCAAAGATGCGAAGGAGACAGTTCAAGAGTGTGTTTCCGAATTCATCAGTTTCATCACGAGCGAgtatccatttgatatggtttttcggtgtcatatgtcgcatgttgcccttgtcttactgtttctttacgtccgctaatgtggccgttggaccgtaataacg--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164117203|gb|ES165588.1|ES165588
EST:     TTCGTCACCAGCGA                         AGCGAGTGATAAATGTCAAAGAGAGAAAAGGAAGACTATTAATGGAGATGA
genomic: TTCGTCACCAGCGAgtatgtcttt ... tgatgagcagAGCGAGTGATAAATGTCAAAGAGAGAAAAGGAAGACTATTAATGGAGATGA
EST: gi|124957919|gb|EL032703.1|EL032703
EST:     AATTCATCAGTTTCGTCACCAGCGA                         AGCGAGTGATAAATGTTCAAAGAGAGAAAAGGAAGACTATTAATGGAGATG
genomic: AATTCATCAGTTTCGTCACCAGCGAgtatgtcttt ... tgatgagcagAGCGAGTGATAAATG-TCAAAGAGAGAAAAGGAAGACTATTAATGGAGATG