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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagcaatgaccaaagtaaacttgcagccactgaaagttattagtgatgatacaccctaaccttcagctctactagagatttcgctgttctaagtgttc...

Basic information

species Arabidopsis thaliana
transcript AT2G36480.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G37600.1 (Glycine max), 5'ss of exon 2
ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagcaatgaccaaagtaaacttgcagccactgaaagttattagtgatgatacaccctaaccttcagctctactagagatttcgctgt--tctaagtgttc------
  | |||| |||   |||   ||| || || |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||  |  ||||| |             |||||||   ||  | || |||    |  ||||| ||   | |   |  |    | |  |||||   | ||  |  |   | |       
TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgcaattatgtcaaaacttgt--cctttaaaggttt---gaaatgatgcattttga---taggaatcagtcaagattggacagtgatacagaagcttttgtga

upper sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G37610.1 (Glycine max), 5'ss of exon 3
ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagcaatgaccaaagta----aacttgcagccactgaaagttattagtgatgatacaccctaaccttcagctctactagagatttcgctgttctaagtgttc
  | |||| ||||  |||   ||| || || |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||  |  |||||||  |  ||||  | |    ||||||   ||  | || |||   | |||||        |     ||||      | | |||   | |     |  | || 
TGCTACAGTCAGAAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaagtga-aaccattgcatcaaaacttgt--cctttaaaggtttaaaatgatggattttgatgggaatcagtcaagattg-gatactgttacagaattttttg

upper sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G34910.1 (Glycine max), 5'ss of exon 3
ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagc-aatgaccaaagtaaacttgcagccactgaaagttattagtgatgatacaccctaaccttcagctctactagagatttcgctgttctaagtgttc----
  | |||| |||   |||   ||| || || |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||  |  ||||| |  ||  |    |  |||  |    ||  | || |||   | |||||        ||    ||||     |||||     | |||||  |    ||     
TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgaaccattgcatcaaaact-tgtccctttaaggtttgaaatgatggattttggtaggaatcagt----ctagattcgacactgttacagaattttttgt

upper sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G07660.1 (Glycine max), 5'ss of exon 2
ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagc--aatgaccaaagtaaacttgcagccactgaaagttattagtgatgatacaccctaacc---ttcagctctactagagatttcgctgttctaagtgttc
  | |||  |||   |||  | || || || || ||||| ||||| ||||||||||||||||| ||  ||||||| ||||| || ||||||||  |  ||||| |   |||||    |    | ||  |  |    ||  ||   |    ||||    |         |  |||  |  |  | ||   |    | || ||    
TGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTGAATCCCAAATACTTAGAAAGACAGCGTCTACAGCAGTCCAGCAGGgtaggtgaaatgattgcacctcaatt-tattcttcaaagttttaaaacattgatttgactgggataggtcaagccatgatgcaaatacag--aatttatgttg--