Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtcacttctaatatctatttctgattgtccatttcactggctttctgtaagttagtaactttatgttatggggctttatag

Basic information

species Arabidopsis thaliana
transcript AT2G35610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 3
AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtcacttctaatatctatttctgattgtccatttcactggctttctgtaag------ttagtaactttatgt-tatggggctttatag--------------------------
|||| | | |||||||||||||| |||||||| || |||||||| ||| |||| ||||||||||| ||||  ||| | |   | || ||| | ||||||||||||   || ||  | |  |||  || |   ||||   |  | |    | | |||        ||| ||    |   | |   |   ||| | |                          
AATGCTGTAATAGTGACCTTTGGTAACTATGCATTCATGGATTTTATTCTGACGTGGGTTAAACAATTGAGAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagc-atctctgtttaagtcttgttttatctgtcatgtatattattatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctacattttag

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 3
AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtcacttctaatatctatttctgattgtccatttcactggctttctgtaagttagtaactttatgttatggggctttatag---------------
||  |||| || ||||||||||| |||||||| |||||||| || ||| ||||||||||| |||| |||| |||| | |   | || |||  |||||||||||||| ||| |   | | | || | | |  || || ||     ||  ||| |  |  || |||| |     |  | | | |   ||                
AACATTATAATTGTGACCTTTGGTAACTATGCATTTATGGACTTTATTCTGACTTGGGTTGAACAGTTGAATGATCTGGGAGTTTCTAATTATCTTGTTGgtgagt-gtcgcgatttaaacct-tctatatttctctatcatg-tgtttttgttgagttttgtaattgcccttgctagagatgcgtatctggtattgtgtaca

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 1
AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtcacttctaatatctatttctgattgtccatttcactggctttctgtaagtta-gtaactttatgttatggggctttatag-------------------------------------------------
||| |||| ||  |||||||||| |||||||| |||||||| || ||| ||||||||||| |||| |||| |||| | |   | || |||  ||||||||||||||  ||||   | |   ||   |||  || ||  | |||   |||||   | ||||  |||| |     |  | | | |   ||                                                  
AATATTATAATTTTGACCTTTGGTAACTATGCGTTTATGGACTTTATTCTGACTTGGGTTGAACAGTTGAATGATCTGGGAGTTTCTAATTATCTTGTTGgtgagtc-tcacgatttaagcct---tctatttttctctatcatgtgcttttgttgagttttgtaattgccattgttagagatgcgtatctggtagtgtacagttgactaaaaagggttctgaaaatctaccttttag

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 2
AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtcacttctaatatctatttctgattgtccatttcactggctttctgtaagttagtaactttatgt-tatggggctttatag--------------------------
|||| ||| |||||||||||||| ||||| || || |||||||| ||| | || ||||||||||| ||||| ||| | |   | || ||| | ||||||||||||   || ||  | |  |||  || |   ||||   |  |     |     |   ||| ||    |   | |   |   ||| | |                          
AATGCTATAATAGTGACCTTTGGTAACTACGCGTTCATGGATTTTATTCTTACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagc-atctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttag

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 3
AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtc-------acttctaatatctatttctgattgtccattt--cactggctttctgtaagttagtaactttatgttatggggctttatag------------
||||| || |||||||| ||||| || ||||| || |||||||| ||  | ||||||||||| |||||||||||| | | | |||||||| |||| ||||||  |||          || | ||||  ||   |   | | ||  |||  |||    | | ||| | ||   ||     ||||| ||   |||  |             
AATGTCATAATAGTGACGTTTGGTAATTATGCATTCATGGATTTTATCCTCACTTGGGTTAAGCACTTGACTGATCTGGGTATCTCCAATCTTCTCGTTGgtaggttcctcattcggacctgtaattacttccttgaaatatcacttttccacatattctatgtcaattttcaagac--tgttaaggaagtttgaaattgttgttatag