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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGACgtaaccaatataatctcttaatcatcttttgattcctctggtttctttagaattggttttaaaagaattatattttttctgtgttttag

Basic information

species Arabidopsis thaliana
transcript AT2G35260.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35260.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G005859_T02 (Zea mays), 5'ss of exon 2
AATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGACgtaaccaatataatctcttaatcatcttttgattcctctggtttctttag--aattggttttaaaagaattatattttttctgtgttt-tag--------------------------------------
 || || |   | || || ||  |||| |||||    |||||  | |  || |||||||||||| | ||||||||||||||||| |||||||| ||||| |||     || |   || |   ||| |   | | |     | |    |||   ||| |  ||  |  |  | |  ||     ||| |  |||                                      
GATAGACTGCACGGGGGGCTTCCATCCGTCTCTCACGGCACTCGTCGAGGGTCTTGGCTATGCAGCTCCACCAATCATGGCTCTGCTCTTCATCCTCGATgtat---gtacagcgtcctc-ccatttccagctccagtcagatcagctagttgatttgccttttattatctctgcttaactcgtgctggtagataacttttgcatgtggcctgctaatttctgctttcag

upper sequence: AT2G35260.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv02s0012g01220.t01 (Vitis vinifera), 5'ss of exon 2
AATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGACgtaaccaatataatctcttaatcatcttttgattcctctggtttctttagaattggttttaaaagaattatattttttctgtgttttag---------------
||| |||      || || ||  |||| ||| | |||||  | || |  || ||||| |||||| | |||||||||||||| ||||||||||||||||| |||    | || | || | |   || |      | |||   ||| ||||   |||  |||| |    || | |||||| ||| || | |               
AATCGATAGCATGGGAGGTTTCAATCCATCTTTAGATGCGATTCTAGAGGGTCTTGGATATGCAGCGCCACCAATCATGGCCCTTCTCTTCATACTCGATgtatgtta-atcagctttaacaaatttggaacattctcaaatttgtttat--ttgagtttatattggtt-tcttttttatgttttctggctggaaaaattcata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414687|gb|EG457279.1|EG457279
EST:     GACTTGGCTATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGAC                         GATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCCATTACAGATGTGGAA
genomic: GACTTGGCTATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGACgtaaccaata ... tgtgttttagGATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCCATTAGAGATGTGGAA
EST: gi|124891182|gb|EH970084.1|EH970084
EST:     TATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGAC                         GATGAAGTTGTGAAGCTATCACCGCA
genomic: TATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGACgtaaccaata ... tgtgttttagGATGAAGTTGTGAAGCTATCACCGCA
EST: gi|116414695|gb|EG457287.1|EG457287
EST:     GACTTGGCTATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGAC                         GATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCCATTAGAGATGTGGAA
genomic: GACTTGGCTATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGACgtaaccaata ... tgtgttttagGATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCCATTAGAGATGTGGAA