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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTTCTAACGAATGTTCCAGCGATACTTGTCTTTGTTGCTAGGAAAGTCCATAGGCAATGGCTAAATCCAATGCAGTGCCTTCCTTCTGCCCTTGAGgtggagttatcttgtgttctattcccttctacacatagcctttcagaaattttatcggagcatatatgataagcgatgtgttcatttcataatag

Basic information

species Arabidopsis thaliana
transcript AT2G35155.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35155.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 1
TGGTGTTCTAACGAATGTTCCAGCGATACTTGTCTTTGTTGCTAGGAAAGTCCATAGGCAATGGCTAAATCCAATGCAGTGCCTTCCTTCTGCCCTTGAGgtggagttatcttgtgttctattcccttctacacatagcctttcagaaattttatcggag-----catatatgataagcgatgtgttcatttcataatag---
 |||||| | ||  || ||||||| || |||||||| |||||  | ||||| || ||||||||||| || |  || |||||||| ||| ||||||||||||||| |  || ||| |||||  |  ||      ||  |  | |       ||||  |||      || |  |   ||  ||  | || |||   || |     
AGGTGTTTTGACTGATATTCCAGCTATTCTTGTCTTCGTTGCCCGTAAAGTTCACAGGCAATGGCTCAACCATATTCAGTGCCTACCTGCTGCCCTTGAGgtgggga-attttg-gttcttctggctatgttgca-ggtttctacatggctttagtggatctcctcacacttttcaattgaattattgattatttatttttgt