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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCATGAACAAACTCTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTTTCTAACTTGGTCTATGAGAATGGCCACATGAAACATCAACTTCACACTgtaaagttcacttttcactattttctgtctctaaaactcaattctatgaagcattttgtttgaaagttgttatcttttttttggaatgtag

Basic information

species Arabidopsis thaliana
transcript AT2G34710.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 2
TGCCATGAACAAACTCTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTTTCTAACTTGGTCTATGAGAATGGCCACATGAAACATCAACTTCACACTgtaaagttcacttttcactattttctgtctctaaaactcaattctatgaa-gcattttgt--------------ttgaaagttg--ttatcttttttttggaatgtag-----
||| |||||||| || || ||||| |||||||| |||||||||||||| |||||| |  |||| |||||||||||  ||||||| || ||  | |||||||| |  ||| || |       | | | | |||     ||| || | |||| || ||||||              || |  | ||    || ||||  || |||  | |     
TGCAATGAACAAGCTGTTAATGGAGGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTGTATGAGAATGGTTACATGAAGCAACAGATACACACTgtgatattctctatctctctctctgtctttcttctcttca-ttttgtgaatgctttttgtattttctgaatatattaatggctgaaccatgttttggtttgaactttgaacag

upper sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G02750.1 (Glycine max), 5'ss of exon 2
TGCCATGAACAAACTCTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTTTCTAACTTGGTCTATGAGAATGGCCACATGAAACATCAACTTCACACTgtaaagttcacttttcactattttctg----tctctaaaactcaattctatgaagcattttgtttgaaagttgttatcttttttttggaatgtag
||| |||||||| || || ||||| || ||||| |||||||||||||| |||||| |  |||| |||||||||||  ||||||| || ||  | |||||||| |   |  ||| ||  |||||| ||      | |     |   ||  ||  |  | |   |     |  | ||   ||    || |||     
TGCAATGAACAAGCTTTTAATGGAGGAAAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTTTATGAGAATGGTTACATGAAGCAACAGATACACACTgtgagcctttcttctctttattttgtgaatgctttttgtgttttttttaatataataatgattcaaccatgttttggtttgaactttgaacag--