1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTTCTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGgtatttgtttaatcttagtttttgatatcgtattaagaatttacaatggatctttgatggggctttcgatttctgtag
species | Arabidopsis thaliana |
transcript | AT2G34590.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACG ACGAAGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGGEST: gi|125310841|gb|EL324926.1|EL324926
genomic: CTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGgtatttgttt ... atttctgtagACGAAGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGG
EST: CTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACG ACGAAGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGEST: gi|152034282|gb|BP824175.2|BP824175
genomic: CTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGgtatttgttt ... atttctgtagACGAAGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTG
EST: CTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACG ACGAAGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGGEST: gi|164053032|gb|ES187480.1|ES187480
genomic: CTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGgtatttgttt ... atttctgtagACGAAGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGG
EST: GTCGCTCTGAACCGTTGATACCAAATGCTGTTACG TEST: gi|164053032|gb|ES187480.1|ES187480
genomic: GTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGgtatttgttt ... atttctgtag-
EST: GTCGCTCTGAACCGTTGATACCAAATGCTGTTACG T
genomic: GTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGgtatttgttt ... atttctgtag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTTCTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGgtatttgtttaatcttagtttttgatatcgtattaagaatttacaatggatctttgatggggctttcgatttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT