1 5' 3' | 2 5' 3' | 3 5' 3' |
ATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggttttgttttttatatctttaccagtaaattgaagttcttatggtttcaagaaattttacagggttttcaattattggaatgttgtttctgttggctctttatctgaatacaatcttactaagaggttacggatcttggactttgtag
species | Arabidopsis thaliana |
transcript | AT2G34200.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG GAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGACEST: gi|116391853|gb|EG434445.1|EG434445
genomic: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggtttt ... gactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
EST: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG GAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGACEST: gi|116391852|gb|EG434444.1|EG434444
genomic: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggtttt ... gactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
EST: TCGTAGCNNNNNNNNGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG GAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGACEST: gi|116391850|gb|EG434442.1|EG434442
genomic: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggtttt ... gactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
EST: TCGTAGCNNNNNNNNGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG GAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
genomic: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggtttt ... gactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggttttgttttttatatctttaccagtaaattgaagttcttatggtttcaagaaattttacagggttttcaattattggaatgttgtttctgttggctctttatctgaatacaatcttactaagaggttacggatcttggactttgtag
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