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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTTTTCTTGCTAACTGTCGCTTACTATGCCTTCTTTGCTCCATTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTGgtaagacctaaaacgaaacattgttacactaagctctcagttgcattaaacttgttctttatctcacatctctcatcactatggcaatttattcatagagtttgcataatgattttacag

Basic information

species Arabidopsis thaliana
transcript AT2G33640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G01720.1 (Glycine max), 5'ss of exon 2
TGTATTTTTCTTGCTAACTGTCGCTTACTATGCCTTCTTTGCTCCATTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTGgtaagacctaaaacgaaacattgttacac-taagctctcagttgcattaaacttgttctttatctcacatctctcatcactatggcaatttattcatagagtttgcataatgattttacag
 ||||||||||||||| || | || || ||||| ||||||||||| |||||||||||  |  ||||||||||| | || ||||||||||||||| |  |||||||   ||    ||  | |   | | | |  | | |    | |   | | | |||||     |   ||     ||  ||      | ||   | || |  ||| |              
AGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTTGGAAAGGACATCTATGAATATTTGGCTATTGGTGTTTACTCTGTATTGgtaagcggtactctgattcttctctgctcatgtgttttttcatactgcagattcgttctaacaatgggattcaatattccttcattgacttgaacttaaatgttgaactgcag--------

upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G01810.1 (Glycine max), 5'ss of exon 2
TGTATTTTTCTTGCTAACTGTCGCTTACTATGCCTTCTTTGCTCCATTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTGgtaagacctaaaacgaaacattgttacac----taagctctcagttgcattaaacttgttctttatctcacatctctcatcactatggcaatttattca-tagagtttgcataatgattttacag
|||||||||||||||| || | || || ||||| ||||||||||| ||||| |||||  |  ||||||||||| | || ||||||||||||||| |  |||||||   ||    ||  | |   | | |    |  ||||     |   | | ||      ||  |   | |          | ||     || ||| | |  |  ||  ||  |||  |  |||
TGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTGGGAAAGGACATCTATGAATATGTGGCTATTGGTGTTTACTCTGTATTGgtaagcagtactctgattcttctctgctccccctccgctcatgtgtttttcatacggaagattcgttctaaaaaatgggattcaatattccttcattgacttcaacttaaatgttgaact-gcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116400824|gb|EG443416.1|EG443416
EST:     TTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTG                         GCGTTTTCGGTTTTAGTTCTTTACATCCGATGCACTGGTATAGATCCTGCA
genomic: TTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTGgtaagaccta ... gattttacagGCGTTTTCGGTTTTAGTTCTTTACATCCGATGCACTGGTATAGATCCTGCA
EST: gi|116400803|gb|EG443395.1|EG443395
EST:     TTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTG                         GCGTTTTCGGTTTTAGTTCTTTACATCCGATGCACTGGTATAGATCCTGCA
genomic: TTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTGgtaagaccta ... gattttacagGCGTTTTCGGTTTTAGTTCTTTACATCCGATGCACTGGTATAGATCCTGCA