1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACGCCTTGTTTGGAAGGAATGAAGCATGTCAAATCTGATCAAGGCGAGATGCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGgtaataaagggagaagctttttctaattgtttctttgtctgtcttaatacttttaatgaggttattgacatttgttattgtgattgttccttgttcttca...
species | Arabidopsis thaliana |
transcript | AT2G33470.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAG ATAAATTTGGAGCTGCTATGACTCTEST: gi|116453283|gb|EG495875.1|EG495875
genomic: GCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGgtaataaagg ... tattttccagATAAATTTGGAGCTGCTATGACTCT
EST: GCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAG ATAAATTTGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACAEST: gi|116448815|gb|EG491407.1|EG491407
genomic: GCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGgtaataaagg ... tattttccagATAAATTTGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACA
EST: GCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAG ATAAATTTGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACA
genomic: GCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGgtaataaagg ... tattttccagATAAATTTGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCCTTGTTTGGAAGGAATGAAGCATGTCAAATCTGATCAAGGCGAGATGCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGgtaataaagggagaagctttttctaattgtttctttgtctgtcttaatacttttaatgaggttattgacatttgttattgtgattgttccttgttcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgttc