Sequence
atgc intronic sequence ATGC exonic sequenceATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCAATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCTAAGTCCAAGgtgtgtgccattttgctaaatttttttggcctctggtttataaaaatccatttctcaatcactgccttgttctctgtaattctgattttgtggtttgaagttgttgtcacaactttttaggaggaattattagaattaaaagttcacatctcttggatatcttgaatttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G32960.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G32960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G05400.1 (Glycine max), 5'ss of exon 2
ATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCAATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCTAAGTCCAAGgtgtgtgccattttg-ctaaatttttttggcctctggtttataaaaatccatttctcaatcactgccttgttctctgtaattctgattttgtggtttgaagttgttgtcacaactttttaggaggaattattagaattaaaagttcacatctcttggatatcttgaatttgcag
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ATATCTGTGTCCTGAGCCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTTTCAGTTTGGGATTGAGGGCCATAAGgtctatttctatctatctatgtcttcaaccttcttttttctggtcttgtga------tttctcaccttccagttgggtctgattgtttt--atcttgaggtct--atttg----------------------------------------------------------------------
upper sequence: AT2G32960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv12s0059g01400.t01 (Vitis vinifera), 5'ss of exon 2
ATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCAATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCTAAGTCCAAGgtgtgtgccattttgctaaatttttttggcctctggtttataaaaatccatttctcaatcactgccttg---ttctctgtaattctgattttgtggtttgaagttgttgtcacaactttttaggaggaattattagaattaaaagttcacatctcttggatatcttgaatttgcag
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ATACCTTTGCCCGGAGACGTATCCGGAGGCGAATAATGAGTTCCTCAAGTCGAATGGGATTAAGCTTTTTCAGTTTGGAATTGAAGGATATAAGgt----atattttcgtcctcattgaatcgttt---------gtttaaatgaatttggaaggaggtacttgctttgagttcatctatgatgaagctttaacaggt-ggagatgct--------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19874640|gb|AU235471.1|AU235471EST: CAATGGAATTAGTCTTTTTCAGTTTGGCATTTGAAGGCTCTAAGTCCAAG TGTCTTCCCGGATTA
genomic: CAATGGAATTAGTCTTTTTCAGTTTGGCATT-GAAGGCTCTAAGTCCAAGgtgtgtgcca ... gaatttgcagTGTCTTCCCGGATTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCAATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCTAAGTCCAAGgtgtgtgccattttgctaaatttttttggcctctggtttataaaaatccatttctcaatcactgccttgttctctgtaattctgattttgtggtttgaagttgttgtcacaactttttaggaggaattattagaattaaaagttcacatctcttggatatcttgaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG