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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGCTCAGAGCTTATTTGACAAAGTAAATGAAATGGATGGTTCGACTGCTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGgtaaaataacactgatattgtagaggccaaattttgtaaccgttttttaatgcgttactattagtacaaaggcttacttttgggaaccttctgctatag

Basic information

species Arabidopsis thaliana
transcript AT2G31400.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31400.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0005g01660.t01 (Vitis vinifera), 5'ss of exon 2
CCAAGCTCAGAGCTTATTTGACAAAGTAAATGAAATGGATGGTTCGACTGCTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGgtaaaat----aacactgatattgtagaggccaaattttgtaaccgttttttaatgcgttactattagtacaaag---gcttacttttgggaaccttctgctatag
 ||||| ||   | | |||||  | || ||  | ||||||  |||||| || ||||||||||| ||||| || || |||||||| ||||||||||| |||||||  |    |  |||| || |  | ||  ||   |||   ||    | | ||     ||  |  ||||||| |     |||  |   | ||   |    |||  
TCAAGCACAATCCCTGTTTGATGAGGTGAAGCAGATGGATTCTTCGACCGCATCTGCCTTCTATAATGCTCTGACCGACATGCTATGGCACTTTGGTCAGgtaatttgtgaataactgttaatccaaagtacaggatttt--acttgatctgaacatagtatga--agtacaaggtgtatttaactggagcaaagatactttat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124999128|gb|EL071397.1|EL071397
EST:     TCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAG                         AAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGG
genomic: TCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGgtaaaataac ... tctgctatagAAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGG
EST: gi|86022312|gb|DR318065.1|DR318065
EST:     CTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAG                         AAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGGCAAGTTTGG
genomic: CTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGgtaaaataac ... tctgctatagAAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGGCAAGTTTGG
EST: gi|124967534|gb|EL041564.1|EL041564
EST:     C-TCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAG                         AAACGAGGTGCAGAACTGGTGG
genomic: CTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGgtaaaataac ... tctgctatagAAACGAGGTGCAGAACTGGTGG