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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctgattattacacattgatatgttttgtaatcctgtactactcctagagcttgtgcttacttataatttctggtgcag

Basic information

species Arabidopsis thaliana
transcript AT2G30950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G26230.1 (Glycine max), 5'ss of exon 2
TGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctgattattacacattgatatgttttgtaatcctgtactactcctagagcttgt-gcttacttataatttctggtgcag
||| ||||| |||||||||||| | || || ||||| ||||| || || || ||||||||||||||||| || ||||| || || ||||||||  | ||||||  ||   ||||| | |          |||||| |    |||  | | ||| |  |  | ||||  | |               
TGGGTTTGAGGGTAACACTGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGGGTCGGTTTGATAGACAGgtatgattatattatgaaatgcctcatgcttttgtgaatgagtaa-attactaaacatcattgctttttcag--------------

upper sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G05820.1 (Glycine max), 5'ss of exon 2
TGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctgattattacaca-ttgatatgttttgtaatcctgtactactcctagagc-ttgtgcttacttataatttctggtgcag
||| ||||| ||||| || ||| | || ||  |||| || || || ||||  ||||||||||| ||||| ||||| ||||||||||| |||||  | ||||||  ||   ||||  | |   || || |||||  |||       | | || | || | | ||||||  ||  |             
TGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGAGTTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattatattagcaaatgcttaatgtgtttattaac---aagcaaatcgttgaacatagtgctt--ttgcag------------

upper sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
TGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctgattattacacattgatatgttttgtaatcctgtactactcctagagcttgtgcttacttataatttctggtgcag
|||||||||||| ||||||||| | || ||  |||| || || || || |||||||||||||||||||| || |||||||| ||||| |||||| | ||||||      ||  ||   | |||| | | ||   | ||| | || ||    | |      | ||||| |  ||  | ||| ||||
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaat---atattgtt-ttttgccttatcttttattataagtggga--aatacttacgttaaagctttggagcag

upper sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S9_115V6.1 (Physcomitrella patens), 5'ss of exon 3
TGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctgattattacacattgatatgttttgtaatcctgtact-----actcctagagcttgtgcttactta----taatttctggtgcag-----------------------------------------------------------------------------------------------------
||| ||||| ||||| || |||||||| ||| |||||||||||||||| || || || |||||  |||||||| || |||| || || ||||| || |||||  ||     || |   |||  ||| | |   |||   || |  |     ||||   |||  |    || |||     | |  | | |  |||                                                                                                     
TGGATTTGAGGGTAATACAGGTGTTATTGTAATTGCTGCAACCAATAGGGCTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAGgttatactatgttctgtgacac-gatctttaccgtagctcttttttttctcactcgccgagtctccaatttctttacgctgaactttagatcagtgtgcctggagtagtatcagaatacatgatgcaacttcacatcgatgaaggtagtgttagtttgtgccaatgtaacgccttcttctgtctctcctgttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125026398|gb|EL098667.1|EL098667
EST:     CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG                         GTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
EST: gi|47831928|gb|CK121612.1|CK121612
EST:     CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG                         GTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
EST: gi|163997752|gb|ES096944.1|ES096944
EST:     CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG                         GTAAGTGTTGACGTTCCTGACGTTAAGGGG
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGG
EST: gi|124788459|gb|EH878138.1|EH878138
EST:     CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG                         GTAAGTGTTGACG
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACG
EST: gi|164164193|gb|ES125932.1|ES125932
EST:     CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG                         GTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT