1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttcttctcttattcaatatcttagtatgttgcagagttgtgtaaagataatctagaaatttggattcttgctttttagtaggatcaatgctaatgttgttattgtattcaaaatgaatag
species | Arabidopsis thaliana |
transcript | AT2G30105.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGG GAAGGTCCAATACTTAAGGAAGCTAGTACAAGGCCAATCTCTAGAACTGTTEST: gi|86067168|gb|DR362925.1|DR362925
genomic: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttc ... aaatgaatagGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTT
EST: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGG GAAGGTCCAATACTTAAGGAAGCTAGTACAAGGCCAATCTCTAGAACTGTTEST: gi|86067167|gb|DR362924.1|DR362924
genomic: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttc ... aaatgaatagGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTT
EST: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGNCTGCATCAAGGG GAAGGTCCAATACTTAAGGAAGCTAGTACAAGGCCAATCTCTAGAACTGTTEST: gi|124818121|gb|EH902987.1|EH902987
genomic: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttc ... aaatgaatagGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTT
EST: TGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGG GAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTTEST: gi|164217617|gb|ES183953.1|ES183953
genomic: TGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttc ... aaatgaatagGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTT
EST: GGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGG GAAGGTCCAATACTTAAGGAAGCTAGTACAAGGCCAATCTCTAGAACTGTTEST: gi|86067171|gb|DR362928.1|DR362928
genomic: GGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttc ... aaatgaatagGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTT
EST: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGG GAAGGTCCAATACTTAAGGAAGCTAGTACAAGGCCAATCTCTAGAACTGTTEST: gi|86067169|gb|DR362926.1|DR362926
genomic: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttc ... aaatgaatagGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTT
EST: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGG GAAGGTCCAATACTTAAGGAAGCTAGTACAAGGCCAATCTCTAGAACTGTTEST: gi|86067170|gb|DR362927.1|DR362927
genomic: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttc ... aaatgaatagGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTT
EST: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGG GAAGGTCCAATACTTAAGGAAGCTAGTACAAGGCCAATCTCTAGAACTGTT
genomic: GAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttc ... aaatgaatagGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGgtcagtgttcttctcttattcaatatcttagtatgttgcagagttgtgtaaagataatctagaaatttggattcttgctttttagtaggatcaatgctaatgttgttattgtattcaaaatgaatag
- - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT