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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAGGAGCATCGCTGACGCTATCCAAGAATGGGTGGCGTGTTCTTGACGCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGGgtacgatttttttgattctgtcttgtaataatttggtcttggttttagctgagtgtgttggtatgataagctgtgcag

Basic information

species Arabidopsis thaliana
transcript AT2G29720.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037178|gb|DR332933.1|DR332933
EST:     GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGG                         GGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAA
genomic: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGGgtacgatttt ... agctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAA
EST: gi|86037181|gb|DR332936.1|DR332936
EST:     GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGG                         GGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAA
genomic: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGGgtacgatttt ... agctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAA
EST: gi|86037180|gb|DR332935.1|DR332935
EST:     GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGG                         GGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAA
genomic: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGGgtacgatttt ... agctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAA