1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGCATGAATGATCGTGGTGTTTCATACACTTTTGGAGCTGACAAAGTCGCAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaacttgagttatatctgccatttagtttattatgaaaactgtgcaaccttaatttgagtgtattggctctgtttatag
species | Arabidopsis thaliana |
transcript | AT2G29400.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACEST: gi|86075183|gb|DR370940.1|DR370940
genomic: GAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTAC
EST: CAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTAEST: gi|164210547|gb|ES046973.1|ES046973
genomic: CAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTA
EST: GAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTAEST: gi|164060156|gb|ES186386.1|ES186386
genomic: GAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTA
EST: CAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCEST: gi|125320505|gb|EL334590.1|EL334590
genomic: CAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGC
EST: CTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTAEST: gi|164163190|gb|ES206230.1|ES206230
genomic: CTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTA
EST: CAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTAEST: gi|164214858|gb|ES018731.1|ES018731
genomic: CAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTA
EST: GAGTTCTTGGAGAAACATTGACATGGACCTTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTAEST: gi|116434806|gb|EG477398.1|EG477398
genomic: GAGTTCTTGGAGAAACA-TGACATGGACCTTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTA
EST: CAGAGTTCTTGGAGAA-CATGACATGGACCTTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACEST: gi|125250669|gb|EL264754.1|EL264754
genomic: CAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGAC
EST: TTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTAEST: gi|164231709|gb|ES002467.1|ES002467
genomic: TTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTA
EST: GAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAG GTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTA
genomic: GAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaactt ... ctgtttatagGTTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCATGAATGATCGTGGTGTTTCATACACTTTTGGAGCTGACAAAGTCGCAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGgttttaacttgagttatatctgccatttagtttattatgaaaactgtgcaaccttaatttgagtgtattggctctgtttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA