Sequence
atgc intronic sequence ATGC exonic sequenceTTCACTTGTATATGGCTACATGCTGGGGTTTTTCATGTTCTTGCCAACATGTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAATTTGGATTTGgtatgcatcatgagttggtttatgtgccaaaatgtgtatggctgatgctgaaagacttgctttttatttactaattctcattttctttgacag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G29050.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G29050.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G04230.1 (Glycine max), 5'ss of exon 2
TTCACTTGTATATGGCTACATGCTGGGGTTTTTCATGTTCTTGCCAACATGTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAATTTGGATTTGgtatgcatcatgagttggtttatgtgccaaaatgtgtatggctgat-gctgaaagacttgctttttatttactaattctcattttctttgacag---------------------------------------------------------------------------------------------------
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TTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCATCTGCTTGCCAACATGTTGAGTCTTGTTTTCATTGGAATTCGCCTAGAGCAAGAATTTGGATTTGgtacggttctggtaattatccttgcattgtcaattatatcatcattcactcatttcccttttccatcaccaaaacttttcacattattaagggtttattgcataaatatatgttctggaagaaacttagcagactttagcacaactatctcagtttctgattgtaatttctacgttggcttgtcctttggcag
upper sequence: AT2G29050.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G41170.1 (Glycine max), 5'ss of exon 2
TTCACTTGTATATGGCTACATGCTGGGGTTTTTCATGTTCTTGCCAACATGTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAATTTGGATTTGgtatgcatcatgagttggtttatgtgccaaaatgtgtatggctgatgctgaaagacttgctttttat--ttactaattctcattttctttgacag---------------------------------------------------------------------------------
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TTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCACGTGCTTGCCAACATGTTGAGTCTCGTTTTTATTGGAATTCGCCTTGAGCAAGAATTTGGATTTGgtatggtgctggtaattatccttgcattgtcaagtatacgtatatcattcattcatttcccttttcacattattaagggtttactgcataaatattctggaagaaactgagcagactttagctgcaactatctcagtttctgattgtaatttctacgttggcttgccctttggcag
upper sequence: AT2G29050.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g04890.t01 (Vitis vinifera), 5'ss of exon 2
TTCACTTGTATATGGCTACATGCTGGGGTTTTTCATGTTCTTGCCAACATGTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAATTTGGATTTGgtatgcatcatgagttggtttatgtgccaaaatgtgtatgg---ctgatgctgaaagacttgctttttatttactaattctcattttctttgacag----
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ATCTCTTGTATATGGCTACATGCTGGGGTGTTCCATGTACTTGCCAATATGTTGAGTCTTGTATTTATTGGAATTCGGCTAGAGCAAGAATTTGGGTTTGgtatgtgctaaactttgccaacttcatcttattatgtatcagctctcaaattttcaaaatcctcctatgagcagcataacacacatcatttaatggttatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19876034|gb|AU236865.1|AU236865EST: GTNGAGCCTTATCTTCATTGGCNTTCGACTTGAGCA-GAATTTGGATTTG TNCGCATTGGATTGCTTTATATGATATCTGGATTTGGGTGGAAG
genomic: GTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAATTTGGATTTGgtatgcatca ... tctttgacagTACGCATTGGATTGCTTTATATGATATCTGGATTTGG-TGGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCACTTGTATATGGCTACATGCTGGGGTTTTTCATGTTCTTGCCAACATGTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAATTTGGATTTGgtatgcatcatgagttggtttatgtgccaaaatgtgtatggctgatgctgaaagacttgctttttatttactaattctcattttctttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA