1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGATTATCAGCGGTTCATGTACCTTATGCTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACGTATCCTTTGACTAAGCAACAGgttagtgagtgtgattagttgaattttgcagctcctcttgtcactttgattcaattttggcatgttggttgagaatttttgagcattgcttttgttttggaatcctttag
species | Arabidopsis thaliana |
transcript | AT2G28800.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTAAGCAACAG GTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATTEST: gi|125029907|gb|EL102176.1|EL102176
genomic: CTAAGCAACAGgttagtgagt ... aatcctttagGTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATT
EST: GCGACGTATCCTTTGACTAAGCAACAG GTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATTEST: gi|116412155|gb|EG454747.1|EG454747
genomic: GCGACGTATCCTTTGACTAAGCAACAGgttagtgagt ... aatcctttagGTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATT
EST: TGCTTACGATTATCGTCAAAGCAGCGACGTATCCTTTGACTAAGCAACAG GTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATTEST: gi|125293499|gb|EL307584.1|EL307584
genomic: TGCTTACGATTATCGTCAAAGCAGCGACGTATCCTTTGACTAAGCAACAGgttagtgagt ... aatcctttagGTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATT
EST: AGCAGCGACGTATCCTTTGACTAAGCAACAG GTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATT
genomic: AGCAGCGACGTATCCTTTGACTAAGCAACAGgttagtgagt ... aatcctttagGTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATTATCAGCGGTTCATGTACCTTATGCTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACGTATCCTTTGACTAAGCAACAGgttagtgagtgtgattagttgaattttgcagctcctcttgtcactttgattcaattttggcatgttggttgagaatttttgagcattgcttttgttttggaatcctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA