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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagtttttttccgcattgttctctgatttctgattctaaatccttcgattagatcatcgaagactatgaaaatttgttgctcttaagaaattaagttt...

Basic information

species Arabidopsis thaliana
transcript AT2G27960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G08760.1 (Glycine max), 5'ss of exon 3
GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagtttttttccgcattgttctctgatttctgattctaaatccttcgattagatcatcgaagactatgaaaatttgttgctcttaagaaattaagttt---------
 || || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||  |    | | || | | |  |||| || | ||   | | | |||| |||     |||  | ||  | ||| ||| | ||   |    ||  |          
ACATGTGGTTCTTCCTCCTGAAGTCGCAAAACTGCTTCCCAAGAATCGTCTTCTCTCCGAAgtaagtagtaacactctttctccac-aatttttg-tgcttcgtgcgt-gatt-gat-----aagtgtttgtgatttttttgttttttgaattaaaaactcgttttatgc

upper sequence: AT2G27960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G19780.1 (Glycine max), 5'ss of exon 3
GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagt-----ttttttccgcattgttctctgatttctg----attctaaatccttcgattagatcatcgaagactatgaaaatttgttgctcttaagaaattaagttt
 || || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||      ||||||| |   ||| | ||  || ||    ||| | || | || |      |  |  |    | | |||| | |||  | |  ||||         
ACATGTGGTTCTTCCTCCTGAAGTCGCAAAACTGCTTCCCAAGAATCGTCTTCTCTCCGAAgtaagtattcactttttcccctcagttttgtgccttgtgcgtaattgttaagcgtttgtggtttttttttatttatttaaaaactcgtttttatgtagaa---------

upper sequence: AT2G27960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G08890.1 (Glycine max), 5'ss of exon 2
GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagtttttttccgcattgttctctgatttctgattctaaatccttcgattagatcatc---gaagactatgaaaatttgttgctcttaagaaattaagttt
 ||||| ||||| ||||||||||| || ||||| ||||| |||||||| ||||||||||||||||||  || |     |     | |  |||   ||| ||||   || |  ||  | ||     || |  ||  |  |||  | |   ||    | |||    
ACACGTGGTTCTGCCTCCTGAAGTTGCCAAACTGCTTCCTAAGAATCGACTTCTCTCCGAAgtaagtacttatttttgtaaaa-tatattttgaaattttaaaatattggtctaatttatataaaaaaataatatagttttagttcctatattttactaaaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053815|gb|DR349572.1|DR349572
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053847|gb|DR349604.1|DR349604
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|124730226|gb|EH821628.1|EH821628
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCA
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCA
EST: gi|86053835|gb|DR349592.1|DR349592
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053806|gb|DR349563.1|DR349563
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053851|gb|DR349608.1|DR349608
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053797|gb|DR349554.1|DR349554
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053820|gb|DR349577.1|DR349577
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053801|gb|DR349558.1|DR349558
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053850|gb|DR349607.1|DR349607
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053822|gb|DR349579.1|DR349579
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053844|gb|DR349601.1|DR349601
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053853|gb|DR349610.1|DR349610
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053808|gb|DR349565.1|DR349565
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053830|gb|DR349587.1|DR349587
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053845|gb|DR349602.1|DR349602
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053834|gb|DR349591.1|DR349591
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|116474540|gb|EG517132.1|EG517132
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAG
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAG
EST: gi|86053839|gb|DR349596.1|DR349596
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053838|gb|DR349595.1|DR349595
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053846|gb|DR349603.1|DR349603
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053840|gb|DR349597.1|DR349597
EST:     TTCCTCCTGAAGTCGCTRAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053807|gb|DR349564.1|DR349564
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053802|gb|DR349559.1|DR349559
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|125160971|gb|EL188304.1|EL188304
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         GACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053811|gb|DR349568.1|DR349568
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053800|gb|DR349557.1|DR349557
EST:     TTCCTCCTGAAGTCTCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053817|gb|DR349574.1|DR349574
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053809|gb|DR349566.1|DR349566
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|116474537|gb|EG517129.1|EG517129
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAG
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAG
EST: gi|86053854|gb|DR349611.1|DR349611
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053823|gb|DR349580.1|DR349580
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCWAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053813|gb|DR349570.1|DR349570
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053803|gb|DR349560.1|DR349560
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053827|gb|DR349584.1|DR349584
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053849|gb|DR349606.1|DR349606
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053852|gb|DR349609.1|DR349609
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053837|gb|DR349594.1|DR349594
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053833|gb|DR349590.1|DR349590
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053805|gb|DR349562.1|DR349562
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053842|gb|DR349599.1|DR349599
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053812|gb|DR349569.1|DR349569
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053798|gb|DR349555.1|DR349555
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053799|gb|DR349556.1|DR349556
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         ANCGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053818|gb|DR349575.1|DR349575
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053825|gb|DR349582.1|DR349582
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGC-AAGCTGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053848|gb|DR349605.1|DR349605
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053836|gb|DR349593.1|DR349593
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053828|gb|DR349585.1|DR349585
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86075134|gb|DR370891.1|DR370891
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053816|gb|DR349573.1|DR349573
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053814|gb|DR349571.1|DR349571
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053832|gb|DR349589.1|DR349589
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053819|gb|DR349576.1|DR349576
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053843|gb|DR349600.1|DR349600
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053804|gb|DR349561.1|DR349561
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
EST: gi|86053841|gb|DR349598.1|DR349598
EST:     TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAA                         AACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC
genomic: TTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagttttt ... aatttcgaagAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCGAAgtaagtttttttccgcattgttctctgatttctgattctaaatccttcgattagatcatcgaagactatgaaaatttgttgctcttaagaaattaagttt

- - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa