1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTCGGGTTAACGGGAGGCATAGCGTCTGGGAAGAGTACAGTGTCTAACCTCTTCAAGGCTAGTGGCATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAgtaaggaacaaacatctctcttttctacttgctggaattcttttgtaactattgtgtcaccgttgctaagagagatgtactcctagatgcaatttagctcaagagaagtttagtaaaagatgtggaaatgtgttgttttactatatag
species | Arabidopsis thaliana |
transcript | AT2G27490.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTTCAAGGCTAGTGGCATTCCCGTTGTTGACGCTGATGTTGTTGCTCGA GATGTATTGAAGAAAGGAAGCGGNGGATGGAAAAGAGTCGTTGCAGCTTTTEST: gi|86086005|gb|DR381764.1|DR381764
genomic: TCTTCAAGGCTAGTGGCATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAgtaaggaaca ... tactatatagGATGTATTGAAGAAAGGAAGCGGTGGATGGAAAAGAGTCGTTGCAGCTTTT
EST: CTTCAAGGCTAGT-GCATTCCCCGTTGTTGACGCTGATGTTGTTGC-CGA GATGTA-TNAAGAAAGGAANCGG-GGATGGAAAAGAGTCGTTGCAGCTTTT
genomic: CTTCAAGGCTAGTGGCATT-CCCGTTGTTGACGCTGATGTTGTTGCTCGAgtaaggaaca ... tactatatagGATGTATTGAAGAAAGGAAGCGGTGGATGGAAAAGAGTCGTTGCAGCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCGGGTTAACGGGAGGCATAGCGTCTGGGAAGAGTACAGTGTCTAACCTCTTCAAGGCTAGTGGCATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAgtaaggaacaaacatctctcttttctacttgctggaattcttttgtaactattgtgtcaccgttgctaagagagatgtactcctagatgcaatttagctcaagagaagtttagtaaaagatgtggaaatgtgttgttttactatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT