1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCAGAGATTTTCTTCCGGTGCTTGTCGCCCCAGGGATGATGTCGGTATGGGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCATgtgagtttgaaaatatatatcaatctttgttttcctttcatatgacaactttttgtttcttatgctcttgaaatgtatgttaacttacag
species | Arabidopsis thaliana |
transcript | AT2G26800.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCAT TGATGATGATAAAAGCTTTGCTAAAGAGTCATTCCCGTGGAGAAGGCATACEST: gi|86068878|gb|DR364635.1|DR364635
genomic: GGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCATgtgagtttga ... taacttacagTGATGATGATAAAAGCTTTGCTAAAGAGTCATTCCCGTGGAGAAGGCATAC
EST: GGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCAT TGATGATGATAAAAGCTTTGCTAAAGAGTCATTCCCGTGGAGAAGGCATACEST: gi|86068879|gb|DR364636.1|DR364636
genomic: GGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCATgtgagtttga ... taacttacagTGATGATGATAAAAGCTTTGCTAAAGAGTCATTCCCGTGGAGAAGGCATAC
EST: GGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCAT TGATGATGATAAAAGCTTTGCTAAAGA
genomic: GGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCATgtgagtttga ... taacttacagTGATGATGATAAAAGCTTTGCTAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGAGATTTTCTTCCGGTGCTTGTCGCCCCAGGGATGATGTCGGTATGGGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCATgtgagtttgaaaatatatatcaatctttgttttcctttcatatgacaactttttgtttcttatgctcttgaaatgtatgttaacttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA