Sequence
atgc intronic sequence ATGC exonic sequenceGAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggtacatacatgctctataaaactatgtatgtttttgtttctataaccatttatgattctttgacag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G26170.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G26170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G05520.1 (Glycine max), 5'ss of exon 3
GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtaca-atggtacatacatgctctataaaactatgta-tgtttttgtttctataaccatttatgattctttgacag--------------------------
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AGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATTCCCTCCCCAATTTCTGCTTCTCCTCTTCACCAAAAAGGCCTCTTCTTCAGCCGgtacgcaaattacgactcaacagtgttcaataatatagtaatgttatttctacaactagtgtag--tgtttgataagtaatttcagtactttataagttgtt
upper sequence: AT2G26170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G11040.1 (Glycine max), 5'ss of exon 2
GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgta--caatggtacatacatgctct----ataaaactatg-----tatgtttttgtttctataaccatttatgattctttga----cag-----------
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AAAAAGTGGGTATCAAACAATTCAAAGACATTCCAAACAGAAGCATTCCCTCTCCTATTTCTGCTTCTCCTCTTCACCAAAAAGGTCTCTTCTTTACCAGgtatgcaattttgttctcttccttttgtaacaaaagcataaagcataattattaatttatgagacaagttattattcaatgagtttcagagaatagataa
upper sequence: AT2G26170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G34530.1 (Glycine max), 5'ss of exon 2
GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgta--caatggtacatacatgctct---------ataaaactatg-----tatgtttttgtttctataaccatttatgattctttga--cag--------
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AAGAAGTGGGAATAAAAAAATTCAAAGACATTCCAAACAGAAGCATTCCCTCTCCTATTTCAGCTTCCCCCCTTCACCAAAAAGGTCTCTTCTTTACCAGgtatacaatttaatttttttcttttctttttgtaataatagcataaacaataattgttaatttacgagacaaactattattcaataagttagagaataga
upper sequence: AT2G26170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G05510.1 (Glycine max), 5'ss of exon 2
GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtaca------atggtacatacatgctctataaaactatgtatgtttttgt--ttctataaccatttatgatt--ctttgacag----------------
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AGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATTCCCTCACCAATTTCTGCTTCCCCTCTTCACCAAAAGGGCCTCTTCTTCAGCCGgtatgcaaattatgacccaacagctttcaataatagtaatgttatttctacaatttggtagtgtttgccaagtaatttcagcagttataaacaactttaa
upper sequence: AT2G26170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0008g01100.t01 (Vitis vinifera), 5'ss of exon 2
GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggtacatacatgctctataaaactatg---tatgtttttgtttctataaccatttatgattc-tttgacag---------------------------------------------------------------------------------------------------------
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GAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATTCCCTCTGCCATCTCAGCATCCCCTCTCCACCAAAAGGGTCTCTTCTTCACCAGgtatttctccatatgtat-ctccataaatacatagactataagaatgagttagatgccatatgtatctgacttgagtgagccaacaatctataccaagctaaaaagaagaaagccagcagattttaaattcaagtgagttgatttaaagtgatcagtatatctgatgaaagttggctttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164002265|gb|ES026273.1|ES026273EST: CTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAG GGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTCTATCAGCC
genomic: CTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggt ... tctttgacagGGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTCTATCAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggtacatacatgctctataaaactatgtatgtttttgtttctataaccatttatgattctttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA