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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGAGTCATTTTGGACTTTGCTGGATCTAACTTCATCAATGTTGATGATTTTGCATTTGGTCCTCCTGCTCGCTATCTCCAACTCGATAGAACCAAGgtattagtatctgcttctttattaagtagaatctggttatgcatggactttgttagttttgtatcaaattataagaactttttaatctttatcaaatgtgtgtgtttgtggcag

Basic information

species Arabidopsis thaliana
transcript AT2G26070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G34740.1 (Glycine max), 5'ss of exon 3
AGATGGAGTCATTTTGGACTTTGCTGGATCTAACTTCATCAATGTTGATGATTTTGCATTTGGTCCTCCTGCTCGCTATCTCCAACTCGATAGAACCAAGgtattagtatctgcttctttattaagtagaatctggttatgcatggactttgttagttttgtatcaaattataagaactttttaatctttatcaaatgtgtgtgtttgtggcag
 ||||||||  |||| || ||| | |||||  |  |  | ||||||||||||||||||||||||||    ||  | ||  | |||||||||   |   ||||| | || ||| |   || | ||  || |||||  |  ||| |    | |   || ||  | |||  | ||   | | |    | | ||  ||||||  ||  |         
GGATGGAGTTGTTTTAGATTTTTCAGGATCATATCTTGTGAATGTTGATGATTTTGCATTTGGTCCAGTGGCAAGATACTTGCAACTCGATCATAGACAGgtact-gtttct-cagattcactatcta-aatctcttgttgccttctttcttacagattgttctcat-tcatgctagcat----accattcacaaatgcatgcatgct------

upper sequence: AT2G26070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G10770.1 (Glycine max), 5'ss of exon 3
AGATGGAGTCATTTTGGACTTTGCTGGATCTAACTTCATCAATGTTGATGATTTTGCATTTGGTCCTCCTGCTCGCTATCTCCAACTCGATAGAACCAAGgtattagtatctgcttctttattaagtagaatctggttatgcatggactttgttagttttgtatcaaattataagaactttttaatctttatcaaatgtgtgtgtttgtggcag
 ||||||||  |||| || ||| | |||||  |  |  | ||||||||||||||||||||||||||    ||  | ||  | ||||| ||| | |   ||||| | || ||| |   || ||||  || |||||  |  ||| |    | |   || ||  | ||   | ||   | | | | |  | | |    |||  ||            
GGATGGAGTTGTTTTAGATTTTTCAGGATCATATCTTGTGAATGTTGATGATTTTGCATTTGGTCCAGTGGCAAGATACTTGCAACTTGATCGTAGACAGgtact-gtttct-caggttcattatcta-aatctcttgttgccttctttcttacagattgttctctt-tcatgctagcatatcatccataaatgcatgcatgct----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877202|gb|AU238033.1|AU238033
EST:     ATTTTGCATTTGGTCCTCCTGCTCGCTATCTCCAACTCGATAGAACCAAG                         TGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGTATGGATTCAAA
genomic: ATTTTGCATTTGGTCCTCCTGCTCGCTATCTCCAACTCGATAGAACCAAGgtattagtat ... tttgtggcagTGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGTATGGATTCAAA