Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGATTTCCTAAACCCTTCTCCTGAAAAGAAATTGGTTATCGGTTTTGACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctttttttgtatgatttattgtttacctctattggtcgtttataattcttactggagatcttgtcttggcttggcag

Basic information

species Arabidopsis thaliana
transcript AT2G25910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25910.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 5'ss of exon 2
TGCTGATTTCCTAAACCCTTCTCCTGAAAAGAAATTGGTTATCGGTTTTGACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtg--tgacctttttttgtatgatttattgtttacctctattggtcgtttataattcttactggagatcttgtc--ttggcttg-gcag-----------
   ||| |||||  | || |||||||||| ||||||||| || |||||||| ||||| ||||||||||| || || ||||| | ||||||||||||||||||   |||| || ||        ||   |      |||   || | |  |    |    |      || ||  |  |||  ||  | ||           
AATTGAATTCCTGGAGCCCTCTCCTGAAAGGAAATTGGTCATTGGTTTTGATTGTGAAGGTGTTGACCTATGTCGCCATGGAACACTTTGTATCATGCAGgtaattgactttcttggaccatgttagctcagagtctcagatgatagaattctgtctgcatgaagaattttccccattgaattatggagtttattcattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86035177|gb|DR330930.1|DR330930
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035184|gb|DR330937.1|DR330937
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035180|gb|DR330933.1|DR330933
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035183|gb|DR330936.1|DR330936
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035178|gb|DR330931.1|DR330931
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035173|gb|DR330926.1|DR330926
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035181|gb|DR330934.1|DR330934
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035176|gb|DR330929.1|DR330929
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035186|gb|DR330939.1|DR330939
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGAGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035185|gb|DR330938.1|DR330938
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035174|gb|DR330927.1|DR330927
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
EST: gi|86035182|gb|DR330935.1|DR330935
EST:     ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG                         ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG
genomic: ACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAGgtgtgacctt ... ggcttggcagATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAG