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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAATTTGGCCTCATGATTTTCGAACTGGATGGAGTTATTGTGTCACTATACCATCGTGGACACTTCTTTCAAAATCGAAAAATTCAGATCCTATAGTGgtaaataagtttcgatctctctctctacacagtgtagatttttctatagctagttgttgttcttatcgaagttgtgtattttcgtgaactattccaaggaactcttgctcgatatatgtgacattcttgaggtacag

Basic information

species Arabidopsis thaliana
transcript AT2G25350.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25350.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G06980.1 (Glycine max), 5'ss of exon 2
TACAATTTGGCCTCATGATTTTCGAACTGGATGGAGTTATTGTGTCACTATACCATCGTGGACACTTCTTTCAAAATCGAAAAATTCAGATCCTATAGTGgtaaa-taagtttcgatctctctctctacaca-gtgtagatttttctatagctagttgttgttcttatcgaagttgtgtattttcgt----gaactattccaaggaactcttgctcgatatatgtgacattcttgaggtacag
|||| | ||||| ||  ||  ||  ||||| ||||||||||||||||| ||||| || ||| |  || || ||||||| |  ||||||||||||||||||||||| |   ||   ||| |  | |     ||     ||||||     || ||  ||||    | | || |  |||  | | || |     ||| ||||  |                                         
TACAGTGTGGCCACACAATCATCTTACTGGTTGGAGTTATTGTGTCACAATACCTTCTTGGGCCTTTGTTCCAAAATCAAGGAATTCAGATCCTATAGTGgtaaagtttattgatatcccaattttcgttcataaccagatttaggagtaact--ttgtaccacctttctagtttggatttgttaggattagaagtattata-----------------------------------------

upper sequence: AT2G25350.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G07080.1 (Glycine max), 5'ss of exon 2
TACAATTTGGCCTCATGATTTTCGAACTGGATGGAGTTATTGTGTCACTATACCATCGTGGACACTTCTTTCAAAATCGAAAAATTCAGATCCTATAGTGgtaaa-taagtttcgatctctctctctacacagtgt-agatttttctatagctagttgttgttcttatcgaagttgtgtattttcgtgaactattccaaggaactcttgctcgatatatgtgacattcttgaggtacag
|||| | ||||| ||  ||  ||| ||||| ||||||||||||||||| ||||| || ||| |  || || ||||||| |  ||||||||||||||||||||||| |   ||   ||| |  | | |   ||  || ||||||     || ||  ||||    ||| || |  |||  |        ||| ||||  |   |  |                                  
TACAGTGTGGCCACACAATCATCGTACTGGTTGGAGTTATTGTGTCACAATACCTTCTTGGGCCTTTGTTCCAAAATCAAGGAATTCAGATCCTATAGTGgtaaagtttattgatatcccaatttttgttcatggtcagatttaggagtaact--ttgtaccacttttctagtttggatta------gaagtattatactcagtttga-------------------------------