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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGCTTCAGATGGGGGAAGTTGTCTCTACGATTCCGAgtatgtatctaatctctcgattattgtatagattatggatctagtttatgtatcgtgattttacgaattttggttttgatctgatctttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G24765.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24765.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0052g01720.t01 (Vitis vinifera), 5'ss of exon 3
ATCGGCTTCAGATGGGGGAAGTTGTCTCTACGATTCCGAgtatgtatctaatctctcgattattgtatagattatggatctagtttatgtatcgtgattttacgaattttggtttt--gatctgatctttgcag-----
|||||||||||||||||||||||||||| || ||||| |||  ||||    |||||      |||| | | ||        ||  |   ||     |      |||  |||  |||   ||||    | | | |     
ATCGGCTTCAGATGGGGGAAGTTGTCTCCACAATTCCAAgttggtattctttctctgcgcctttgttttgtttggttgctgagaatccttaggaaaaggaacagaacattgaattttgaatctttcatgttctgccatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084655|gb|DR380414.1|DR380414
EST:     ATCGGCTTCAGATGGGGGAAGTTGTCTCTACGATTCCGA                         CTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG
genomic: ATCGGCTTCAGATGGGGGAAGTTGTCTCTACGATTCCGAgtatgtatct ... atctttgcagCTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG
EST: gi|125249151|gb|EL263236.1|EL263236
EST:     ATGGGGGAAGTTGTCTCTACGATTCCGA                         CTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG
genomic: ATGGGGGAAGTTGTCTCTACGATTCCGAgtatgtatct ... atctttgcagCTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG
EST: gi|164192937|gb|EL986987.1|EL986987
EST:     ATCGGCTTCAGATGGGGGAAGTTGTCTCTACGATTCCGA                         CTATTGGATTTAACGTTGAGACTGTGCAGTAC
genomic: ATCGGCTTCAGATGGGGGAAGTTGTCTCTACGATTCCGAgtatgtatct ... atctttgcagCTATTGGATTTAACGTTGAGACTGTGCAGTAC
EST: gi|125296023|gb|EL310108.1|EL310108
EST:     CTTCAGATGGGGGAAGTTGTCTCTACGATTCCGA                         CTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG
genomic: CTTCAGATGGGGGAAGTTGTCTCTACGATTCCGAgtatgtatct ... atctttgcagCTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG
EST: gi|124708200|gb|EH799602.1|EH799602
EST:     TTGTCTCTACGATTCCGA                         CTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG
genomic: TTGTCTCTACGATTCCGAgtatgtatct ... atctttgcagCTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGGCTTCAGATGGGGGAAGTTGTCTCTACGATTCCGAgtatgtatctaatctctcgattattgtatagattatggatctagtttatgtatcgtgattttacgaattttggttttgatctgatctttgcag

- - - - CAGATG