1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACAACTTGGAAGTACATGTGTTGCTCAATGGAGTATTCGTCCTCAATTTGCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttttaagtctctggattgcattcagttctgtggctttaagcctttcaagtattttgatttgttcacattgcacatcttaagattagtcttcgtagaatgaagtttgtattatgtgatttctacactgagagttttatatatgaaatagcattaaaggttttccttttcacaacttttacag
species | Arabidopsis thaliana |
transcript | AT2G22360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAA TTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTCEST: gi|86036066|gb|DR331819.1|DR331819
genomic: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttt ... acttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
EST: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAA TTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTCEST: gi|124858921|gb|EH943358.1|EH943358
genomic: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttt ... acttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
EST: CTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAA TTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTCEST: gi|86036067|gb|DR331820.1|DR331820
genomic: CTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttt ... acttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
EST: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAA TTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
genomic: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttt ... acttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAACTTGGAAGTACATGTGTTGCTCAATGGAGTATTCGTCCTCAATTTGCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttttaagtctctggattgcattcagttctgtggctttaagcctttcaagtattttgatttgttcacattgcacatcttaagattagtcttcgtagaatgaagtttgtattatgtgatttctacactgagagttttatatatgaaatagcattaaaggttttccttttcacaacttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT