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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTATTACCACAAAGCTGTTGAATTCTATGAGATGCTTGCGAAACAACTTGTTCATCAAGGTCATGTTCTTGATGTTTTTGCTAGTTCTGTTGATCAGgtgattctgtggaaatatctgtcattgttagtactgtctttcttgttttgtagctatctcttttatttaatatgtgcatctctag

Basic information

species Arabidopsis thaliana
transcript AT2G21630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G09230.1 (Glycine max), 5'ss of exon 3
TATGTATTACCACAAAGCTGTTGAATTCTATGAGATGCTTGCGAAACAACTTGTTCATCAAGGTCATGTTCTTGATGTTTTTGCTAGTTCTGTTGATCAGgtgat---------tctgtggaaatatctgtcattgttagtac----tgtctttcttgttttgtagctatctcttttatttaatatgtgcatctctag--
     ||||||| ||   |||  ||||||||||    ||| |||| || |||||||||||||| ||||| || ||| |||||||| || || |||||||||| ||         | | |  |   | |  |  | ||| ||||        || | |||||   || |  ||  | | | |    | | || ||  ||  
GCCACATTACCATAACTGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTTCATCAAGGCCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGgtaatgttctcacttttatcaactgaccctttctggttggtacacagcaatttgcctgtttataagttgactaatgtttgtctgttttccacctaaagaa

upper sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 3
TATGTATTACCACAAAGCTGTTGAATTCTATGAGATGCTTGCGAAACAACTTGTTCATCAAGGTCATGTTCTTGATGTTTTTGCTAGTTCTGTTGATCAGgtgat---------tctgtggaaatatctgtcattgttagtac----tgtctttcttgttttgtagct-atctcttttatttaatatgtgcatctctag-
     ||||||| |||  |||  ||||||||||    ||| |||| || ||||| |||||||||||||| || ||| |||||||| || || |||||||||| ||         | | |  |   | || |  | ||| ||||      | ||   |||||   || | | |   ||||| |    | | || ||  || 
GCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTGCATCAAGGTCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGgtaatgttttcacttttatcaactgaccttttctggttggtacacagcattttgtctgtttaaaagttgaccatgtttatctctgttttccacctaaaga