1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCTTGAAAGCGAGGAAATTTGATGTTGAGAAAGCTAAACAAATGTGGGCTGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGgtatgctattaaatagaagatagtagtttaaaccattgttgtctgtttttgtaacgttttatttctctcgttag
species | Arabidopsis thaliana |
transcript | AT2G21520.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTAATTCAG GATTTTGATTTCGAAGAGATTAATEST: gi|124726173|gb|EH817575.1|EH817575
genomic: TGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTA-TTCAGgtatgctatt ... ctctcgttagGATTTTGATTTCGAAGAGATTAAT
EST: AATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAG GATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCCACAATGTEST: gi|125132548|gb|EL174570.1|EL174570
genomic: AATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGgtatgctatt ... ctctcgttagGATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCCACAATGT
EST: CTGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAG GATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCCACAAEST: gi|124710536|gb|EH801938.1|EH801938
genomic: CTGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGgtatgctatt ... ctctcgttagGATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCCACAA
EST: TCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAG GATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCCACAATGTEST: gi|124892031|gb|EH970933.1|EH970933
genomic: TCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGgtatgctatt ... ctctcgttagGATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCCACAATGT
EST: CTGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAG GATTTTAGAATTTCGAAGAGATTAATGAAGTTTTGAAACATTA
genomic: CTGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGgtatgctatt ... ctctcgttagGATTTT-GA-TTTCGAAGAGATTAATGAAGTTTTGAAACATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGAAAGCGAGGAAATTTGATGTTGAGAAAGCTAAACAAATGTGGGCTGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGgtatgctattaaatagaagatagtagtttaaaccattgttgtctgtttttgtaacgttttatttctctcgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA