1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACGGGACTAAGGACTCCATCGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGgtgagtttctgctactttttccaatgagtcaagctctctatatttggagcattatttccatttctgatttgaaaatggacctcatgttgaccatttgttctaaatgatcgtttttgcgtag
species | Arabidopsis thaliana |
transcript | AT2G21170.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAG ATGTTGTTGTGTCACCTCCATTTGTCTEST: gi|86068294|gb|DR364051.1|DR364051
genomic: CGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGgtgagtttct ... ttttgcgtagATGTTGTTGTGTCACCTCCATTTGTCT
EST: CGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAG ATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTEST: gi|124836713|gb|EH921152.1|EH921152
genomic: CGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGgtgagtttct ... ttttgcgtagATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGT
EST: TGCAACCTTGGAAGCAGATGTAG ATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTEST: gi|124722172|gb|EH813574.1|EH813574
genomic: TGCAACCTTGGAAGCAGATGTAGgtgagtttct ... ttttgcgtagATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGT
EST: TGGAAGCAGATGTAG ATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTEST: gi|47831761|gb|CK121445.1|CK121445
genomic: TGGAAGCAGATGTAGgtgagtttct ... ttttgcgtagATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGT
EST: CGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAG ATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTEST: gi|116454376|gb|EG496968.1|EG496968
genomic: CGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGgtgagtttct ... ttttgcgtagATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGT
EST: CGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAG ATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGT
genomic: CGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGgtgagtttct ... ttttgcgtagATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGGGACTAAGGACTCCATCGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGgtgagtttctgctactttttccaatgagtcaagctctctatatttggagcattatttccatttctgatttgaaaatggacctcatgttgaccatttgttctaaatgatcgtttttgcgtag
- - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG