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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGAACAGTTAGGAGTGGACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtatatttcttttcaatttcattctctaatattaaccatccaaattaacatgttgctgttatttggtatactag

Basic information

species Arabidopsis thaliana
transcript AT2G20570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20570.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G44330.1 (Glycine max), 5'ss of exon 2
AGTGGAACAGTTAGGAGTGGACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtat----atttcttttcaatttcattctctaatatt---------aaccatccaaattaaca--tgttgctgttatttggtatactag-------
 ||||||||| |||||||||| || || || |||||  | ||| ||||| |||||||| |  ||||||||||||| || ||| ||||||| ||||| |||||  ||      | || || |     | | | |  |||||          ||  || | |||   ||  | | | | || |||  | |   ||       
TGTGGAACAGCTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCACCTTCAAgtacgttctccaacttgttatactgattaattttcaatatctttgtaagaaaaaattccaatctccaattatggttattgtttttttttaaagcaaaagt

upper sequence: AT2G20570.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G13430.1 (Glycine max), 5'ss of exon 2
AGTGGAACAGTTAGGAGTGGACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgt--------tagtatattt-cttttcaatttcattctctaatattaaccatccaaattaacatgtt----gctgttatttggtatactag---------
 ||||||||| |||||||||| || || || |||||  | ||| ||||| |||||||| |  ||||||| ||||| || ||| ||||||||||||| |||||         |   | ||   | |||  |||  ||| ||  | || | | |     | || | |||    |||   |||  |  || |           
TGTGGAACAGCTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTAACTCGCCATAACATTGCTAGTCACCTTCAAgtacgttctccaacttgttaattcttcccttttgttcacttttttttaacctttgtgtgaataagtttcaagctaaaattaagcttattgttatttttct

upper sequence: AT2G20570.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv12s0028g03100.t01 (Vitis vinifera), 5'ss of exon 2
AGTGGAACAGTTAGGAGTGGACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtatatttcttttcaatttcattctctaatattaaccatccaaattaacatgttgctgttatttggtatac-tag----------------------
|||||| ||| |||| ||||| ||||| || |||||  | ||| | ||| |||||||| || ||||||||||||| |||||| ||||||| ||||| |||||  | | ||  | | ||    | |||||   ||       || |     ||  |  ||   || |||||| |   |||                      
AGTGGAGCAGCTAGGTGTGGATAAAGCAGTGCCTTCAAGGATTTTAGAGATTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAAgtatg-aaatcacatctcttcctaattctaccattcctgttattctgtacaaagtcatggatttgtttggtttctgtagaatttttgttgccagtagatct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058102|gb|DR353859.1|DR353859
EST:     TTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAA                         AA-TATAGGTCTCATCGGGAACATTTGCTAGCTCGTGAGGCCNAAGCGGCT
genomic: TTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtatat ... ggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
EST: gi|124980772|gb|EL053699.1|EL053699
EST:     CCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAA                         AAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
genomic: CCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtatat ... ggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
EST: gi|125199208|gb|EL214162.1|EL214162
EST:     CGTTGCTAGTCACCTCCAA                         AAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
genomic: CGTTGCTAGTCACCTCCAAgttagtatat ... ggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
EST: gi|125050867|gb|EL123136.1|EL123136
EST:     TTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAA                         AAATATAGGTCTCATCGGAAACATTTGCTAG
genomic: TTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtatat ... ggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAG