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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGGAGAGTTAGGGAAGAGTTTGCGCGTACTGTTACATCGGCGATTGGTCTTTTCGCATCTACGGAACTTCCTCTTCAGCGTGTTATACTTGCTCCGgtatctatctctctccctttaaaagctatttggatcatgtttttcttgtattggatcgaatttgattgcggttattttgtttgtttatcag

Basic information

species Arabidopsis thaliana
transcript AT2G20190.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0005g05010.t01 (Vitis vinifera), 5'ss of exon 2
GAGTTGGAGAGTTAGGGAAGAGTTTGCGCGTACTGTTACATCGGCGATTGGTCTTTTCGCATCTACGGAACTTCCTCTTCAGCGTGTTATACTTGCTCCGgtatctat-----ctctctccctttaaa-agctatttggatcatgtttttcttgtatt--ggatcgaattt---gattgcggttattt----tgtttg--tttatcag
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AAGCTGGAGAGTTCGAGAAGAGTTTGCTCGGACTGTCACATCAGCAATTAGCCTTTTTGCATCTACGGAGCTTCCTCTTCAGCGGGTTATTCTTCCTCCTgtatgtttgtgggctttcttaacatgaacagacttcttttttgtgctgttatttctttctggaaagggtcttatgattttgcttcttcaaaatttttggatttatcag