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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGGAACTAGGTTTTACTTTCTCATTTCCGGTTAAGCAGCTATCTTTATCCTCTGGCACTCTCATCAACTGGACGAAGGGCTTTTCCATTGACGATACAgttgagcttgttctcctttcatctctttccaccgagtttttgatatgattacgctgtttctgatctcctggcctctgtatctctgtttcttggtgattgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G19860.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19860.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0016g03070.t01 (Vitis vinifera), 5'ss of exon 3
ACGGGAACTAGGTTTTACTTTCTCATTTCCGGTTAAGCAGCTATCTTTATCCTCTGGCACTCTCATCAACTGGACGAAGGGCTTTTCCATTGACGATACAgttgagcttgttctcctttcatctctttccaccgagtttttgatatgattacgctgtttctgatctcctggcctctgtatctctgtttcttggtgattgtgtag-
| ||||||| |||||||||||||||||||| ||||  ||   |||  | || || ||| | ||||| || ||||| ||||| || || || || ||  | ||| | | |  | | | || |||  | |   |  | | |   || ||||   ||  || ||  ||||| |   | | | | | | ||||    | |   | | | 
AAGGGAACTGGGTTTTACTTTCTCATTTCCAGTTAGACAATCATCAATTTCATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatcctagt-taccttgatccttgtttgc--aatctaatat-tgatcctgccatt-ctcttctccagttgtttttttttttttttcccccttaaattattga